Merge pull request #3233 from mashehu/fix-swf-test-profile

use correct profile options for sfw test command
nf-core · Oct 22, 2024 · 170623f · 170623f
2 parents 15c23fb + 2ba0d30
commit 170623f
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -23,6 +23,7 @@
 - chore(deps): update pre-commit hook pre-commit/mirrors-mypy to v1.12.0 ([#3230](https://github.com/nf-core/tools/pull/3230))
 - chore(deps): update pre-commit hook astral-sh/ruff-pre-commit to v0.7.0 ([#3229](https://github.com/nf-core/tools/pull/3229))
 - Update python:3.12-slim Docker digest to 032c526 ([#3232](https://github.com/nf-core/tools/pull/3232))
+- use correct `--profile` options for `nf-core subworkflows test` ([#3233](https://github.com/nf-core/tools/pull/3233))
 
 ## [v3.0.2 - Titanium Tapir Patch](https://github.com/nf-core/tools/releases/tag/3.0.2) - [2024-10-11]
 

diff --git a/nf_core/__main__.py b/nf_core/__main__.py
@@ -1371,7 +1371,7 @@ def command_subworkflows_create(ctx, subworkflow, directory, author, force, migr
 )
 @click.option(
     "--profile",
-    type=click.Choice(["none", "singularity"]),
+    type=click.Choice(["docker", "singularity", "conda"]),
     default=None,
     help="Run tests with a specific profile",
 )