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Ensure pseudoaligner is set if pseudoalignment is not skipped #1124
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@nf-core-bot fix linting |
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Good to go!
We have reports of errors like:
This is because we haven't ensured that the pseudoaligner is defined when pseudoalignment is not skipped. The solution:
PR checklist
nf-core lint
).nextflow run . -profile test,docker --outdir <OUTDIR>
).docs/usage.md
is updated.docs/output.md
is updated.CHANGELOG.md
is updated.README.md
is updated (including new tool citations and authors/contributors).