Merge pull request #1304 from nf-core/no_extra_tpms

Remove redundant gene TPM outputs
nf-core · May 29, 2024 · 21095f3 · 21095f3
2 parents e0b41b4 + 2a86507
commit 21095f3
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -70,6 +70,7 @@ Thank you to everyone else that has contributed by reporting bugs, enhancements
 - [PR #1293](https://github.com/nf-core/rnaseq/pull/1293) - Update subworkflow utils_nfcore_pipeline
 - [PR #1297](https://github.com/nf-core/rnaseq/pull/1297) - Important! Template update for nf-core/tools v2.14.1
 - [PR #1302](https://github.com/nf-core/rnaseq/pull/1302) - Add missing files from Tximport processing
+- [PR #1304](https://github.com/nf-core/rnaseq/pull/1304) - Remove redundant gene TPM outputs
 
 ### Parameters
 

diff --git a/modules.json b/modules.json
@@ -236,7 +236,7 @@
                     },
                     "tximeta/tximport": {
                         "branch": "master",
-                        "git_sha": "689323f8f89a120469b4c898cf7f19f758c3080e",
+                        "git_sha": "5d095e8413da1f4c72b7d07ce87f75c09482486f",
                         "installed_by": ["modules", "quantify_pseudo_alignment"]
                     },
                     "ucsc/bedclip": {
@@ -329,7 +329,7 @@
                     },
                     "quantify_pseudo_alignment": {
                         "branch": "master",
-                        "git_sha": "0c3275555f670ac32270175390a14fa676404bac",
+                        "git_sha": "5d095e8413da1f4c72b7d07ce87f75c09482486f",
                         "installed_by": ["subworkflows"]
                     },
                     "utils_nextflow_pipeline": {

diff --git a/modules/nf-core/tximeta/tximport/main.nf b/modules/nf-core/tximeta/tximport/main.nf
diff --git a/modules/nf-core/tximeta/tximport/templates/tximport.r b/modules/nf-core/tximeta/tximport/templates/tximport.r
diff --git a/modules/nf-core/tximeta/tximport/tests/main.nf.test b/modules/nf-core/tximeta/tximport/tests/main.nf.test