Kallisto quantification #1918

Job	Run time
Run pipeline with test data (23.04.0)	3m 6s
Run pipeline with test data (latest-everything)	3m 7s
Test STAR RSEM with workflow parameters (--skip_qc)	3m 7s
Test STAR RSEM with workflow parameters (--rsem_index false)	3m 5s
Test STAR Salmon with workflow parameters (--skip_qc)	3m 4s
Test STAR Salmon with workflow parameters (--skip_trimming)	3m 7s
Test STAR Salmon with workflow parameters (--gtf false)	3m 6s
Test STAR Salmon with workflow parameters (--star_index false)	3m 5s
Test STAR Salmon with workflow parameters (--transcript_fasta false)	3m 4s
Test HISAT2 with workflow parameters (--skip_qc)	3m 5s
Test STAR Salmon with workflow parameters (--min_mapped_reads 90)	3m 3s
Test HISAT2 with workflow parameters (--hisat2_index false)	3m 4s
Test STAR Salmon with workflow parameters (--with_umi)	3m 3s
Test STAR Salmon with workflow parameters (--with_umi --skip_trimming)	3m 3s
Test STAR Salmon with workflow parameters (--remove_ribo_rna --skip_qualimap)	3m 3s
Test Salmon with workflow parameters (--skip_qc)	3m 7s
Test STAR Salmon with workflow parameters (--bam_csi_index)	3m 3s
Test Salmon with workflow parameters (--skip_alignment --skip_pseudo_alignment)	3m 7s
Test STAR Salmon with workflow parameters (--save_align_intermeds --save_reference)	3m 5s
Test Salmon with workflow parameters (--salmon_index false --transcript_fasta false)	3m 4s
Test STAR Salmon with workflow parameters (--featurecounts_group_type false)	3m 7s
Test STAR Salmon with workflow parameters (--trimmer fastp)	3m 5s
	1h 7m 50s

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