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Kallisto quantification #1915

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Kallisto quantification

Kallisto quantification #1915

Run time

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Job Run time
Test HISAT2 with workflow parameters (--skip_qc)
11m 11s
Test Salmon with workflow parameters (--skip_qc)
22m 4s
Test STAR RSEM with workflow parameters (--skip_qc)
19m 34s
Test Salmon with workflow parameters (--skip_alignment --skip_pseudo_alignment)
7m 25s
Test STAR RSEM with workflow parameters (--rsem_index false)
23m 21s
Test HISAT2 with workflow parameters (--hisat2_index false)
14m 12s
Test Salmon with workflow parameters (--salmon_index false --transcript_fasta false)
19m 49s
Run pipeline with test data (23.04.0)
25m 1s
Test STAR Salmon with workflow parameters (--skip_qc)
16m 34s
Run pipeline with test data (latest-everything)
26m 0s
Test STAR Salmon with workflow parameters (--skip_trimming)
23m 14s
Test STAR Salmon with workflow parameters (--gtf false)
20m 28s
Test STAR Salmon with workflow parameters (--star_index false)
24m 24s
Test STAR Salmon with workflow parameters (--transcript_fasta false)
28m 12s
Test STAR Salmon with workflow parameters (--min_mapped_reads 90)
30m 2s
Test STAR Salmon with workflow parameters (--with_umi)
45m 40s
Test STAR Salmon with workflow parameters (--with_umi --skip_trimming)
26m 3s
Test STAR Salmon with workflow parameters (--remove_ribo_rna --skip_qualimap)
46m 0s
Test STAR Salmon with workflow parameters (--bam_csi_index)
23m 55s
Test STAR Salmon with workflow parameters (--save_align_intermeds --save_reference)
31m 9s
Test STAR Salmon with workflow parameters (--featurecounts_group_type false)
27m 2s
Test STAR Salmon with workflow parameters (--trimmer fastp)
27m 42s
8h 59m 2s