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Update untar #1861

Run time

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Job Run time
Test HISAT2 with workflow parameters (--skip_qc)
9m 47s
Test HISAT2 with workflow parameters (--hisat2_index false)
19m 2s
Test Salmon with workflow parameters (--skip_qc)
18m 12s
Test Salmon with workflow parameters (--skip_alignment --skip_pseudo_alignment)
5m 51s
Test Salmon with workflow parameters (--salmon_index false --transcript_fasta false)
24m 26s
Test STAR RSEM with workflow parameters (--skip_qc)
16m 27s
Test STAR RSEM with workflow parameters (--rsem_index false)
18m 21s
Test STAR Salmon with workflow parameters (--skip_qc)
20m 49s
Test STAR Salmon with workflow parameters (--skip_trimming)
20m 5s
Test STAR Salmon with workflow parameters (--gtf false)
19m 22s
Test STAR Salmon with workflow parameters (--star_index false)
25m 38s
Test STAR Salmon with workflow parameters (--transcript_fasta false)
21m 5s
Test STAR Salmon with workflow parameters (--min_mapped_reads 90)
18m 22s
Test STAR Salmon with workflow parameters (--with_umi)
21m 19s
Test STAR Salmon with workflow parameters (--with_umi --skip_trimming)
24m 44s
Test STAR Salmon with workflow parameters (--remove_ribo_rna --skip_qualimap)
51m 12s
Test STAR Salmon with workflow parameters (--bam_csi_index)
25m 58s
Test STAR Salmon with workflow parameters (--save_align_intermeds --save_reference)
20m 58s
Test STAR Salmon with workflow parameters (--featurecounts_group_type false)
20m 45s
Test STAR Salmon with workflow parameters (--trimmer fastp)
18m 37s
Run pipeline with test data (23.04.0)
20m 48s
Run pipeline with test data (latest-everything)
21m 22s
7h 43m 10s