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README.md: Added ref to downstream analyses #1858

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README.md: Added ref to downstream analyses

README.md: Added ref to downstream analyses #1858

Run time

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Job Run time
Run pipeline with test data (23.04.0)
11m 51s
Run pipeline with test data (23.04.0)
24m 31s
Run pipeline with test data (latest-everything)
12m 6s
Run pipeline with test data (latest-everything)
20m 49s
Test STAR RSEM with workflow parameters (--skip_qc)
12m 52s
Test STAR RSEM with workflow parameters (--skip_qc)
12m 52s
Test STAR RSEM with workflow parameters (--rsem_index false)
22m 3s
Test STAR RSEM with workflow parameters (--rsem_index false)
22m 3s
Test HISAT2 with workflow parameters (--skip_qc)
9m 7s
Test HISAT2 with workflow parameters (--skip_qc)
9m 7s
Test HISAT2 with workflow parameters (--hisat2_index false)
11m 44s
Test HISAT2 with workflow parameters (--hisat2_index false)
14m 42s
Test Salmon with workflow parameters (--skip_qc)
21m 17s
Test Salmon with workflow parameters (--skip_qc)
21m 17s
Test Salmon with workflow parameters (--skip_alignment --skip_pseudo_alignment)
6m 10s
Test Salmon with workflow parameters (--skip_alignment --skip_pseudo_alignment)
6m 10s
Test Salmon with workflow parameters (--salmon_index false --transcript_fasta false)
20m 54s
Test Salmon with workflow parameters (--salmon_index false --transcript_fasta false)
20m 54s
Test STAR Salmon with workflow parameters (--skip_qc)
12m 5s
Test STAR Salmon with workflow parameters (--skip_qc)
15m 30s
Test STAR Salmon with workflow parameters (--skip_trimming)
12m 7s
Test STAR Salmon with workflow parameters (--skip_trimming)
20m 34s
Test STAR Salmon with workflow parameters (--gtf false)
12m 8s
Test STAR Salmon with workflow parameters (--gtf false)
19m 27s
Test STAR Salmon with workflow parameters (--star_index false)
12m 3s
Test STAR Salmon with workflow parameters (--star_index false)
24m 28s
Test STAR Salmon with workflow parameters (--transcript_fasta false)
12m 5s
Test STAR Salmon with workflow parameters (--transcript_fasta false)
24m 19s
Test STAR Salmon with workflow parameters (--min_mapped_reads 90)
12m 6s
Test STAR Salmon with workflow parameters (--min_mapped_reads 90)
19m 1s
Test STAR Salmon with workflow parameters (--with_umi)
12m 5s
Test STAR Salmon with workflow parameters (--with_umi)
25m 19s
Test STAR Salmon with workflow parameters (--with_umi --skip_trimming)
12m 4s
Test STAR Salmon with workflow parameters (--with_umi --skip_trimming)
20m 44s
Test STAR Salmon with workflow parameters (--remove_ribo_rna --skip_qualimap)
12m 5s
Test STAR Salmon with workflow parameters (--remove_ribo_rna --skip_qualimap)
44m 18s
Test STAR Salmon with workflow parameters (--bam_csi_index)
12m 5s
Test STAR Salmon with workflow parameters (--bam_csi_index)
23m 45s
Test STAR Salmon with workflow parameters (--save_align_intermeds --save_reference)
12m 5s
Test STAR Salmon with workflow parameters (--save_align_intermeds --save_reference)
25m 8s
Test STAR Salmon with workflow parameters (--featurecounts_group_type false)
12m 5s
Test STAR Salmon with workflow parameters (--featurecounts_group_type false)
19m 0s
Test STAR Salmon with workflow parameters (--trimmer fastp)
11m 49s
Test STAR Salmon with workflow parameters (--trimmer fastp)
18m 31s
12h 17m 25s