fix report error on tower

assets/main_report/index.qmd

@@ -59,7 +59,7 @@ ref_data <- read_tsv(ref_data_path, col_types = 'dcccccccccccccccddc')
 sendsketch_path <- file.path(params$inputs, "inputs", "sendsketch")
 sketch_data <- map_dfr(list.files(sendsketch_path), function(path) {
     data <- read_tsv(file.path(sendsketch_path, path), skip = 2,
-                     show_col_types = FALSE)
+                     show_col_types = FALSE, col_types = 'ccccdccccddddddddddddddcccdddddddcccc')
     id <- sub(path, pattern = '\\.txt$', replacement = '')
     return(bind_cols(sample_id = rep(id, nrow(data)), data))
 })

assets/main_report/packages.bib

@@ -36,7 +36,7 @@ @Manual{R-bookdown
   title = {bookdown: Authoring Books and Technical Documents with R Markdown},
   author = {Yihui Xie},
   year = {2023},
-  note = {R package version 0.36, 
+  note = {R package version 0.37, 
 https://pkgs.rstudio.com/bookdown/},
   url = {https://github.com/rstudio/bookdown},
 }
@@ -96,7 +96,7 @@ @Manual{R-igraph
   title = {igraph: Network Analysis and Visualization},
   author = {Gábor Csárdi and Tamás Nepusz and Vincent Traag and Szabolcs Horvát and Fabio Zanini and Daniel Noom and Kirill Müller},
   year = {2023},
-  note = {R package version 1.5.1},
+  note = {R package version 1.6.0},
   url = {https://r.igraph.org/},
 }
 
@@ -175,18 +175,18 @@ @Manual{R-phylocanvas
 @Manual{R-plotly,
   title = {plotly: Create Interactive Web Graphics via plotly.js},
   author = {Carson Sievert and Chris Parmer and Toby Hocking and Scott Chamberlain and Karthik Ram and Marianne Corvellec and Pedro Despouy},
-  year = {2023},
-  note = {R package version 4.10.3},
+  year = {2024},
+  note = {R package version 4.10.4},
   url = {https://plotly-r.com},
 }
 
 @Manual{R-poppr,
   title = {poppr: Genetic Analysis of Populations with Mixed Reproduction},
   author = {Zhian N. Kamvar and Javier F. Tabima and Jonah C. Brooks and David Folarin},
-  note = {R package version 2.9.4, 
+  year = {2024},
+  note = {R package version 2.9.5, 
 https://github.com/grunwaldlab/poppr/},
   url = {https://grunwaldlab.github.io/poppr/},
-  year = {2023},
 }
 
 
@@ -201,8 +201,8 @@ @Manual{R-purrr
 @Manual{R-readr,
   title = {readr: Read Rectangular Text Data},
   author = {Hadley Wickham and Jim Hester and Jennifer Bryan},
-  year = {2023},
-  note = {R package version 2.1.4},
+  year = {2024},
+  note = {R package version 2.1.5},
   url = {https://readr.tidyverse.org},
 }
 
@@ -270,7 +270,7 @@ @Manual{R-yaml
   title = {yaml: Methods to Convert R Data to YAML and Back},
   author = {Shawn P Garbett and Jeremy Stephens and Kirill Simonov and Yihui Xie and Zhuoer Dong and Hadley Wickham and Jeffrey Horner and {reikoch} and Will Beasley and Brendan O'Connor and Gregory R. Warnes and Michael Quinn and Zhian N. Kamvar},
   year = {2023},
-  note = {R package version 2.3.7},
+  note = {R package version 2.3.8},
   url = {https://github.com/vubiostat/r-yaml/},
 }