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Missing sample name error Fix linting from a comment #57: Issue comment #15 (comment) created by zachary-foster
April 22, 2024 23:06 2s
April 22, 2024 23:06 2s
Missing fastq1 error Fix linting from a comment #56: Issue comment #16 (comment) created by zachary-foster
April 22, 2024 23:06 2s
April 22, 2024 23:06 2s
Missing fastq2 error Fix linting from a comment #55: Issue comment #17 (comment) created by zachary-foster
April 22, 2024 23:05 2s
April 22, 2024 23:05 2s
Check what happens when either the reference or reference_id columns are empty Fix linting from a comment #54: Issue comment #22 (comment) created by zachary-foster
April 22, 2024 23:04 2s
April 22, 2024 23:04 2s
Including number of genes and SNPs used to build trees Fix linting from a comment #53: Issue comment #50 (comment) created by zachary-foster
April 22, 2024 23:01 2s
April 22, 2024 23:01 2s
Add way for users to specify API keys for NCBI Fix linting from a comment #52: Issue comment #41 (comment) created by zachary-foster
April 22, 2024 22:55 2s
April 22, 2024 22:55 2s
Add a check to the input to ensure only one type of sequence data is present for each sample Fix linting from a comment #51: Issue comment #54 (comment) created by zachary-foster
April 22, 2024 22:41 2s
April 22, 2024 22:41 2s
Check if we need to add quality filtering of flye assemblies of nanopore/pacbio Fix linting from a comment #50: Issue comment #56 (comment) created by zachary-foster
April 22, 2024 22:40 2s
April 22, 2024 22:40 2s
Make input CSV column names and some value case insensitive and spaces = underscores Fix linting from a comment #49: Issue comment #62 (comment) created by zachary-foster
April 22, 2024 22:37 2s
April 22, 2024 22:37 2s
Add option to delete or not publish intermendiate files Fix linting from a comment #48: Issue comment #63 (comment) created by logankblair
April 19, 2024 16:57 2s
April 19, 2024 16:57 2s
check that core gene filter is reporting removed samples Fix linting from a comment #47: Issue comment #44 (comment) created by zachary-foster
April 3, 2024 23:28 1s
April 3, 2024 23:28 1s
Add tmp dir argument to picardtools sortsam Fix linting from a comment #46: Issue comment #48 (comment) created by zachary-foster
April 3, 2024 23:27 2s
April 3, 2024 23:27 2s
If there are no messages, then the report is not made Fix linting from a comment #45: Issue comment #49 (comment) created by zachary-foster
April 3, 2024 23:27 2s
April 3, 2024 23:27 2s
Sample sheet does not appear to contain a header Fix linting from a comment #44: Issue comment #47 (comment) created by zachary-foster
March 18, 2024 17:56 2s
March 18, 2024 17:56 2s
ASSIGN_REFERENCES:SOURMASH_COMPARE error when inputting newly formatted test metadata file Fix linting from a comment #43: Issue comment #46 (comment) created by zachary-foster
February 27, 2024 17:32 3s
February 27, 2024 17:32 3s
ASSIGN_REFERENCES:SOURMASH_COMPARE error when inputting newly formatted test metadata file Fix linting from a comment #42: Issue comment #46 (comment) created by masudermann
February 27, 2024 16:53 2s
February 27, 2024 16:53 2s
ASSIGN_REFERENCES:SOURMASH_COMPARE error when inputting newly formatted test metadata file Fix linting from a comment #41: Issue comment #46 (comment) created by zachary-foster
February 23, 2024 18:05 3s
February 23, 2024 18:05 3s
Test data does not match the input check requirements Fix linting from a comment #40: Issue comment #45 (comment) created by masudermann
February 23, 2024 00:43 2s
February 23, 2024 00:43 2s
Test data does not match the input check requirements Fix linting from a comment #39: Issue comment #45 (comment) created by cahuparo
February 22, 2024 07:29 2s
February 22, 2024 07:29 2s
weird error when downloading genomes? Fix linting from a comment #38: Issue comment #27 (comment) created by zachary-foster
February 13, 2024 20:20 1s
February 13, 2024 20:20 1s
Glitch at the download genome step Fix linting from a comment #37: Issue comment #13 (comment) created by zachary-foster
February 13, 2024 20:19 2s
February 13, 2024 20:19 2s
Circos error within bakta Fix linting from a comment #36: Issue comment #29 (comment) created by zachary-foster
February 13, 2024 20:18 2s
February 13, 2024 20:18 2s
Map with locations of same taxa found in input Fix linting from a comment #35: Issue comment #43 (comment) created by zachary-foster
February 13, 2024 20:15 1s
February 13, 2024 20:15 1s
Add ability to use SRA as sample input Fix linting from a comment #34: Issue comment #36 (comment) created by zachary-foster
February 13, 2024 20:15 3s
February 13, 2024 20:15 3s
Quality filters for the core gene phylogeny Fix linting from a comment #33: Issue comment #37 (comment) created by zachary-foster
February 13, 2024 20:12 2s
February 13, 2024 20:12 2s