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weird error when downloading genomes? #27

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cahuparo opened this issue Oct 8, 2023 · 2 comments

Contributor

cahuparo commented Oct 8, 2023

curl: (3) URL using bad/illegal format or missing URL
ERROR: curl command failed ( Sun Oct 8 04:11:28 PM PDT 2023 ) with: 3
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?query_key=1&WebEnv=MCID_6523371be8af48640e2d92e7&retstart=0&retmax=1580&db=taxonomy&rettype=uilist&retmode=text&tool=edirect&edirect=16.2&edirect_os=Linux&email=changlab%40fileserver%20has%20address%2010.206.67.17
fileserver
ERROR: ELink failure
ERROR: Missing -db argument
ERROR: Missing -db argument

Contributor

zachary-foster commented Oct 11, 2023

Does this happen the same every time you rerun the pipeline?

Contributor

zachary-foster commented Feb 13, 2024

should be fixed by retry

zachary-foster closed this as completed

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