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Merge branch 'dev' into 318-update-for-tes-compliance
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maxulysse authored Oct 14, 2024
2 parents d4355dd + 6e944d8 commit 3370f49
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17 changes: 2 additions & 15 deletions .github/workflows/ci.yml
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Expand Up @@ -69,6 +69,8 @@ jobs:
with:
version: "${{ matrix.NXF_VER }}"

- uses: nf-core/setup-nf-test@v1

- uses: actions/setup-python@v4
with:
python-version: "3.11"
Expand All @@ -79,21 +81,6 @@ jobs:
python -m pip install --upgrade pip
pip install pdiff
- name: Cache nf-test installation
id: cache-software
uses: actions/cache@v3
with:
path: |
/usr/local/bin/nf-test
/home/runner/.nf-test/nf-test.jar
key: ${{ runner.os }}-${{ env.NFT_VER }}-nftest

- name: Install nf-test
if: steps.cache-software.outputs.cache-hit != 'true'
run: |
wget -qO- https://code.askimed.com/install/nf-test | bash
sudo mv nf-test /usr/local/bin/
- name: Run nf-test
run: |
nf-test test --verbose ${{ matrix.nf_test_files }} --profile "+${{ matrix.profile }}" --junitxml=test.xml --tap=test.tap
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -11,6 +11,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
- [PR #300](https://github.com/nf-core/fetchngs/pull/300) - Use file paths instead of tags for testing matrix, should make matrices more efficient
- [PR #303](https://github.com/nf-core/fetchngs/pull/303) - Update wget container for SRA_FASTQ_FTP from 1.20.1 to 1.21.4
- [PR #305](https://github.com/nf-core/fetchngs/pull/305) - Update module sratools/prefetch for reliable download integrity check
- [PR #316](https://github.com/nf-core/fetchngs/pull/316) - Use nf-core/setup-nf-test to install nf-test from cache during CI/CD
- [PR #320](https://github.com/nf-core/fetchngs/pull/20) - Update module multiqc_mappings_config and sratools/prefetch for TES compliance

### Software dependencies
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