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v2.3.0 - Lime Nightingale - [08.11.2024]

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@LaurenceKuhl LaurenceKuhl released this 08 Nov 14:29
2.3.0
0e9f915
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Learn about vigilant mode.

v2.3.0 - Lime Nightingale - [08.11.2024]

Added

  • Add module to classify samples by clonality (#178)
  • Add DrugZ, a module for chemogenetic interaction (#168)
  • Add Hitselection, a module for subsetting more likely true positives for KO screen based on the protein protein interaction (#191)
  • Make the use of gene essentiality module more user friendly and readable in the code (#194)

Fixed

  • Fix cutadapt 3' and 5' no such variable found bug (#187)
  • Fix design matrix bug that introduced dots instead of a hyphen (#190)
  • Make output of FluteMLE optional as when some pathways produce bugs some channels are then empty (#190)
  • Fix a typo in crisprcleanr/normalize, when a user inputs a file (#192)
  • Add Singularity and Docker tests in the CI, also fix any issues users had when running MAGeCKFlute with Docker or Singularity. (#214)

General

  • Run pipeline tests with docker, singularity and conda on CI (#185)
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