Update clades to plot for H1 and H3, refs for H3

nextstrain · Dec 13, 2024 · d825ddb · d825ddb
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commit d825ddb
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Showing 4 changed files with 7 additions and 11 deletions.
diff --git a/config/references_for_titer_plots/h3n2/cell_fra.txt b/config/references_for_titer_plots/h3n2/cell_fra.txt
@@ -6,13 +6,13 @@ A/Sydney/878/2023 # J.2
 A/Nevada/32/2023 # J.2
 A/Croatia/10136/RV/2023 # J.2:145N, vaccine strain
 A/Croatia/10136RV/2023 # J.2:145N, vaccine strain
+A/DistrictOfColumbia/27/2023 # J.2:145N, vaccine strain
+A/DistrictofColumbia/27/2023 # J.2:145N, vaccine strain
 A/Victoria/2997/2023 # J.2:145N
+A/Oklahoma/5/2024 # J.2:158K
 A/Victoria/488/2024 # J.2:158K,207R,227S
 A/Canberra/302/2023 # J.2:140R
 A/Colorado/6/2024 # J.2.1
 A/Switzerland/47775/2024 # J.2.1:309I,63K,189R,208I
-A/Oklahoma/5/2024 # J.2:158K
-A/DistrictOfColumbia/27/2023 # J.2:145N
-A/DistrictofColumbia/27/2023 # J.2:145N
-A/Victoria/979/2024 # J.2:65K,124N,145N,262N
-A/Perth/722/2024 # J.2:124N,145N
+A/Perth/722/2024 # J.2.2:145N
+A/Victoria/979/2024 # J.2.2:65K,145N,262N
diff --git a/config/references_for_titer_plots/h3n2/cell_hi.txt b/config/references_for_titer_plots/h3n2/cell_hi.txt
@@ -5,10 +5,10 @@ A/Canberra/327/2023 # J.1.1:9N,275D
 A/Sydney/878/2023 # J.2
 A/Canberra/302/2023 # J.2:140R
 A/Victoria/2997/2023 # J.2:145N
-A/DistrictOfColumbia/27/2023 # J.2:145N
-A/DistrictofColumbia/27/2023 # J.2:145N
 A/Croatia/10136/RV/2023 # J.2:145N, vaccine strain
 A/Croatia/10136RV/2023 # J.2:145N, vaccine strain
+A/DistrictOfColumbia/27/2023 # J.2:145N, vaccine strain
+A/DistrictofColumbia/27/2023 # J.2:145N, vaccine strain
 A/Victoria/488/2024 # J.2:158K,207R,227S
 A/Colorado/6/2024 # J.2.1
 A/Switzerland/47775/2024 # J.2.1:309I,63K,189R,208I

diff --git a/config/subclades_for_titer_plots_h1n1pdm.txt b/config/subclades_for_titer_plots_h1n1pdm.txt
@@ -1,4 +1,3 @@
-C.1.1
 C.1.8
 C.1.9
 D

diff --git a/config/subclades_for_titer_plots_h3n2.txt b/config/subclades_for_titer_plots_h3n2.txt
@@ -1,7 +1,4 @@
-J
-J.1
 J.1.1
 J.2
 J.2.1
 J.2.2
-J.4
-Original file line number
+Diff line change
@@ -1,4 +1,3 @@
-    C.1.1
     C.1.8
     C.1.9
     D
@@ Expand Down @@