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Merge pull request #917 from nextstrain/emerging-lineages
Update emerging lineages
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,201 +1,103 @@ | ||
| clade gene site alt | ||
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| AY.4.2 (Delta) nuc 22917 G | ||
| AY.4.2 (Delta) nuc 22995 A | ||
| AY.4.2 (Delta) nuc 24410 A | ||
| AY.4.2 (Delta) nuc 27638 C | ||
| AY.4.2 (Delta) nuc 28881 T | ||
| AY.4.2 (Delta) nuc 29402 T | ||
| AY.4.2 (Delta) S 222 V | ||
| AY.4.2 (Delta) S 145 H | ||
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| AY.34 (Delta) nuc 22917 G | ||
| AY.34 (Delta) nuc 22995 A | ||
| AY.34 (Delta) nuc 24410 A | ||
| AY.34 (Delta) nuc 27638 C | ||
| AY.34 (Delta) nuc 28881 T | ||
| AY.34 (Delta) nuc 29402 T | ||
| AY.34 (Delta) nuc 9441 T | ||
| AY.34 (Delta) S 677 H | ||
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| AY.36 (Delta) nuc 22917 G | ||
| AY.36 (Delta) nuc 22995 A | ||
| AY.36 (Delta) nuc 24410 A | ||
| AY.36 (Delta) nuc 27638 C | ||
| AY.36 (Delta) nuc 28881 T | ||
| AY.36 (Delta) nuc 15628 C | ||
| AY.36 (Delta) nuc 21846 T | ||
| AY.36 (Delta) nuc 28461 G | ||
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| AY.39 + S:1073N (Delta) nuc 22917 G | ||
| AY.39 + S:1073N (Delta) nuc 22995 A | ||
| AY.39 + S:1073N (Delta) nuc 24410 A | ||
| AY.39 + S:1073N (Delta) nuc 27638 C | ||
| AY.39 + S:1073N (Delta) nuc 28881 T | ||
| AY.39 + S:1073N (Delta) nuc 27604 A | ||
| AY.39 + S:1073N (Delta) S 1073 N | ||
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| B.1.1.529 (Omicron) nuc 8782 C | ||
| B.1.1.529 (Omicron) nuc 14408 T | ||
| B.1.1.529 (Omicron) nuc 23403 G | ||
| B.1.1.529 (Omicron) nuc 28881 A | ||
| B.1.1.529 (Omicron) nuc 28882 A | ||
| B.1.1.529 (Omicron) nuc 23525 T | ||
| B.1.1.529 (Omicron) nuc 23599 G | ||
| B.1.1.529 (Omicron) nuc 27259 C | ||
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| BA.2 (Omicron) nuc 8782 C | ||
| BA.2 (Omicron) nuc 14408 T | ||
| BA.2 (Omicron) nuc 23403 G | ||
| BA.2 (Omicron) nuc 28881 A | ||
| BA.2 (Omicron) nuc 28882 A | ||
| BA.2 (Omicron) nuc 21618 T | ||
| BA.2 (Omicron) nuc 22775 A | ||
| BA.2 (Omicron) nuc 23525 T | ||
| BA.2 (Omicron) nuc 23599 G | ||
| BA.2 (Omicron) nuc 24424 T | ||
| BA.2 (Omicron) nuc 27259 C | ||
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| BA.1 (Omicron) nuc 8782 C | ||
| BA.1 (Omicron) nuc 14408 T | ||
| BA.1 (Omicron) nuc 23403 G | ||
| BA.1 (Omicron) nuc 28881 A | ||
| BA.1 (Omicron) nuc 28882 A | ||
| BA.1 (Omicron) nuc 15240 T | ||
| BA.1 (Omicron) nuc 23202 A | ||
| BA.1 (Omicron) nuc 23525 T | ||
| BA.1 (Omicron) nuc 23599 G | ||
| BA.1 (Omicron) nuc 24424 T | ||
| BA.1 (Omicron) nuc 27259 C | ||
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| 19A nuc 8782 C | ||
| 19A nuc 14408 C | ||
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| 19B nuc 8782 T | ||
| 19B nuc 28144 C | ||
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| 20A nuc 8782 C | ||
| 20A nuc 14408 T | ||
| 20A nuc 23403 G | ||
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| 20B nuc 8782 C | ||
| 20B nuc 14408 T | ||
| 20B nuc 23403 G | ||
| 20B nuc 28881 A | ||
| 20B nuc 28882 A | ||
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| 20C nuc 1059 T | ||
| 20C nuc 8782 C | ||
| 20C nuc 14408 T | ||
| 20C nuc 23403 G | ||
| 20C nuc 25563 T | ||
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| 20D nuc 4002 T | ||
| 20D nuc 10097 A | ||
| 20D nuc 13536 T | ||
| 20D nuc 23731 T | ||
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| 20E (EU1) nuc 8782 C | ||
| 20E (EU1) nuc 14408 T | ||
| 20E (EU1) nuc 23403 G | ||
| 20E (EU1) nuc 22227 T | ||
| 20E (EU1) nuc 28932 T | ||
| 20E (EU1) nuc 29645 T | ||
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| 20F nuc 1163 T | ||
| 20F nuc 7540 C | ||
| 20F nuc 16647 T | ||
| 20F nuc 18555 T | ||
| 20F nuc 22992 A | ||
| 20F nuc 23401 A | ||
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| 20G nuc 10319 T | ||
| 20G nuc 18424 G | ||
| 20G nuc 21304 T | ||
| 20G nuc 25907 T | ||
| 20G nuc 27964 T | ||
| 20G nuc 28472 T | ||
| 20G nuc 28869 T | ||
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| 20H (Beta, V2) nuc 1059 T | ||
| 20H (Beta, V2) nuc 8782 C | ||
| 20H (Beta, V2) nuc 14408 T | ||
| 20H (Beta, V2) nuc 23403 G | ||
| 20H (Beta, V2) nuc 25563 T | ||
| 20H (Beta, V2) nuc 23063 T | ||
| 20H (Beta, V2) nuc 23012 A | ||
| 20H (Beta, V2) nuc 26456 T | ||
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| 20I (Alpha, V1) nuc 8782 C | ||
| 20I (Alpha, V1) nuc 14408 T | ||
| 20I (Alpha, V1) nuc 23403 G | ||
| 20I (Alpha, V1) nuc 28881 A | ||
| 20I (Alpha, V1) nuc 28882 A | ||
| 20I (Alpha, V1) nuc 23063 T | ||
| 20I (Alpha, V1) nuc 14676 T | ||
| 20I (Alpha, V1) nuc 15279 T | ||
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| 20J (Gamma, V3) nuc 733 C | ||
| 20J (Gamma, V3) nuc 2749 T | ||
| 20J (Gamma, V3) nuc 3828 T | ||
| 20J (Gamma, V3) nuc 5648 C | ||
| 20J (Gamma, V3) nuc 12778 T | ||
| 20J (Gamma, V3) nuc 13860 T | ||
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| 21A (Delta) nuc 22917 G | ||
| 21A (Delta) nuc 22995 A | ||
| 21A (Delta) nuc 27638 C | ||
| 21A (Delta) nuc 28881 T | ||
| 21A (Delta) nuc 29402 T | ||
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| 21B (Kappa) nuc 17523 T | ||
| 21B (Kappa) nuc 22917 G | ||
| 21B (Kappa) nuc 23012 C | ||
| 21B (Kappa) nuc 27638 C | ||
| 21B (Kappa) nuc 28881 T | ||
| 21B (Kappa) nuc 29402 T | ||
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| 21C (Epsilon) nuc 17014 T | ||
| 21C (Epsilon) nuc 21600 T | ||
| 21C (Epsilon) nuc 22018 T | ||
| 21C (Epsilon) nuc 22917 G | ||
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| 21D (Eta) nuc 14407 T | ||
| 21D (Eta) nuc 21717 G | ||
| 21D (Eta) nuc 24224 C | ||
| 21D (Eta) nuc 24748 T | ||
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| 21E (Theta) nuc 12049 T | ||
| 21E (Theta) nuc 23341 C | ||
| 21E (Theta) nuc 23604 A | ||
| 21E (Theta) nuc 24187 A | ||
| 21E (Theta) nuc 24836 A | ||
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| 21F (Iota) nuc 16500 C | ||
| 21F (Iota) nuc 20262 G | ||
| 21F (Iota) nuc 21575 T | ||
| 21F (Iota) nuc 22320 G | ||
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| 21G (Lambda) nuc 21786 T | ||
| 21G (Lambda) nuc 21789 T | ||
| 21G (Lambda) nuc 22917 A | ||
| 21G (Lambda) nuc 23031 C | ||
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| 21H (Mu) nuc 11451 G | ||
| 21H (Mu) nuc 13057 T | ||
| 21H (Mu) nuc 17491 T | ||
| 21H (Mu) nuc 21995 A | ||
| 21H (Mu) nuc 21993 C | ||
| 21H (Mu) nuc 22599 A | ||
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| 21I (Delta) nuc 5184 T | ||
| 21I (Delta) nuc 9891 T | ||
| 21I (Delta) nuc 11418 C | ||
| 21I (Delta) nuc 11514 T | ||
| 21I (Delta) nuc 22227 T | ||
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| 21J (Delta) nuc 4181 T | ||
| 21J (Delta) nuc 11201 G | ||
| 21J (Delta) nuc 11332 G | ||
| 21J (Delta) nuc 19220 T | ||
| 21J (Delta) nuc 27874 T | ||
| BA.1.1 nuc 8782 C | ||
| BA.1.1 nuc 14408 T | ||
| BA.1.1 nuc 18163 G | ||
| BA.1.1 nuc 23403 G | ||
| BA.1.1 nuc 28881 A | ||
| BA.1.1 nuc 28882 A | ||
| BA.1.1 nuc 15240 T | ||
| BA.1.1 nuc 23202 A | ||
| BA.1.1 nuc 23525 T | ||
| BA.1.1 nuc 23599 G | ||
| BA.1.1 nuc 27259 C | ||
| BA.1.1 nuc 2470 T | ||
| BA.1.1 nuc 22599 A | ||
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| BA.2.3 nuc 8782 C | ||
| BA.2.3 nuc 14408 T | ||
| BA.2.3 nuc 18163 G | ||
| BA.2.3 nuc 23403 G | ||
| BA.2.3 nuc 28881 A | ||
| BA.2.3 nuc 28882 A | ||
| BA.2.3 nuc 21618 T | ||
| BA.2.3 nuc 22775 A | ||
| BA.2.3 nuc 23599 G | ||
| BA.2.3 nuc 8991 T | ||
| BA.2.3 nuc 25810 T | ||
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| BA.4 nuc 8782 C | ||
| BA.4 nuc 14408 T | ||
| BA.4 nuc 18163 G | ||
| BA.4 nuc 23403 G | ||
| BA.4 nuc 28881 A | ||
| BA.4 nuc 28882 A | ||
| BA.4 nuc 21618 T | ||
| BA.4 nuc 22775 A | ||
| BA.4 nuc 23599 G | ||
| BA.4 nuc 12160 A | ||
| BA.4 nuc 9866 C | ||
| BA.4 nuc 27788 T | ||
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| BA.5 nuc 8782 C | ||
| BA.5 nuc 14408 T | ||
| BA.5 nuc 18163 G | ||
| BA.5 nuc 23403 G | ||
| BA.5 nuc 28881 A | ||
| BA.5 nuc 28882 A | ||
| BA.5 nuc 21618 T | ||
| BA.5 nuc 22775 A | ||
| BA.5 nuc 23599 G | ||
| BA.5 nuc 12160 A | ||
| BA.5 nuc 9866 C | ||
| BA.5 nuc 27259 A | ||
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| BA.2.9.1 nuc 8782 C | ||
| BA.2.9.1 nuc 14408 T | ||
| BA.2.9.1 nuc 18163 G | ||
| BA.2.9.1 nuc 23403 G | ||
| BA.2.9.1 nuc 28881 A | ||
| BA.2.9.1 nuc 28882 A | ||
| BA.2.9.1 nuc 21618 T | ||
| BA.2.9.1 nuc 22775 A | ||
| BA.2.9.1 nuc 23599 G | ||
| BA.2.9.1 nuc 22916 A | ||
| BA.2.9.1 nuc 24433 G | ||
| BA.2.9.1 nuc 3610 C | ||
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| BA.2.12.1 nuc 8782 C | ||
| BA.2.12.1 nuc 14408 T | ||
| BA.2.12.1 nuc 18163 G | ||
| BA.2.12.1 nuc 23403 G | ||
| BA.2.12.1 nuc 28881 A | ||
| BA.2.12.1 nuc 28882 A | ||
| BA.2.12.1 nuc 21618 T | ||
| BA.2.12.1 nuc 22775 A | ||
| BA.2.12.1 nuc 23599 G | ||
| BA.2.12.1 nuc 22917 A | ||
| BA.2.12.1 nuc 11674 T | ||
| BA.2.12.1 nuc 21721 T | ||
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| BA.2.13 nuc 8782 C | ||
| BA.2.13 nuc 14408 T | ||
| BA.2.13 nuc 18163 G | ||
| BA.2.13 nuc 23403 G | ||
| BA.2.13 nuc 28881 A | ||
| BA.2.13 nuc 28882 A | ||
| BA.2.13 nuc 21618 T | ||
| BA.2.13 nuc 22775 A | ||
| BA.2.13 nuc 23599 G | ||
| BA.2.13 nuc 22916 A | ||
| BA.2.13 nuc 23767 G | ||
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| BA.2.13 nuc 8782 C | ||
| BA.2.13 nuc 14408 T | ||
| BA.2.13 nuc 18163 G | ||
| BA.2.13 nuc 23403 G | ||
| BA.2.13 nuc 28881 A | ||
| BA.2.13 nuc 28882 A | ||
| BA.2.13 nuc 21618 T | ||
| BA.2.13 nuc 22775 A | ||
| BA.2.13 nuc 23599 G | ||
| BA.2.13 nuc 22917 A | ||
| BA.2.13 nuc 7820 C |