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16.0.2

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@victorlin victorlin released this 01 Jul 17:55
· 1415 commits to master since this release

16.0.2 (30 June 2022)

Bug Fixes

  • The entropy panel was unavailable if mutations were not translated #881. This has been fixed by creating an additional annotations block in augur ancestral containing (nucleotide) genome annotations in the node-data #961 (@jameshadfield)
  • ancestral: WARNINGs to stdout have been updated to print to stderr #961 (@jameshadfield)
  • filter: Explicitly drop date/year/month columns from metadata during grouping. #967 (@victorlin)
    • This fixes a bug #871 where augur filter would crash with a cryptic ValueError if year and/or month is a custom column in the input metadata and also included in --group-by.
  • filter: Fix duplicates that may appear in metadata when using --include/--include-where with subsampling #986 (@victorlin)