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Make cd less specific #464

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Nov 18, 2024
Merged

Make cd less specific #464

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8f73f5e
Make cd less specific
pinin4fjords Nov 18, 2024
5183bc4
Update docs/hello_nextflow/03_hello_containers.md
pinin4fjords Nov 18, 2024
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6 changes: 1 addition & 5 deletions docs/hello_nextflow/03_hello_containers.md
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Expand Up @@ -112,11 +112,7 @@ When you run a container, it is isolated from the host system by default.
This means that the container can't access any files on the host system unless you explicitly tell it to.
One way to do this is to **mount** a **volume** from the host system into the container.

Prior to working on the next task, confirm that you are in the `hello-nextflow` directory.

```bash
cd /workspace/gitpod/hello-nextflow
```
Prior to working on the next task, confirm that you are in the `hello-nextflow` directory. The last part of the path shown when you type `pwd` should be `hello-nextflow`.

Then run:

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3 changes: 1 addition & 2 deletions docs/hello_nextflow/04_hello_genomics.md
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Expand Up @@ -54,8 +54,7 @@ The tools we need (Samtools and GATK) are not installed in the Gitpod environmen

!!! note

Make sure you're in the correct working directory:
`cd /workspace/gitpod/hello-nextflow`
Make sure you're in the `hello-nextflow` directory so that the last part of the path shown when you type `pwd` is `hello-nextflow`.

### 0.1. Index a BAM input file with Samtools

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