Merge branch 'develop' of github.com:neurophysiological-analysis/FiNN… #35
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
# This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
name: Python package | |
on: | |
push: | |
branches: [ develop ] | |
jobs: | |
build: | |
runs-on: ubuntu-latest | |
strategy: | |
fail-fast: false | |
matrix: | |
python-version: ["3.8", "3.9", "3.10", "3.11"] | |
steps: | |
- uses: actions/checkout@v3 | |
with: | |
lfs: true | |
- name: Checkout LFS objects | |
run: | | |
git lfs checkout | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v3 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install dependencies | |
run: | | |
sudo apt update && sudo apt install -y libegl1-mesa-dev | |
- name: Install python3 testing dependencies | |
run: | | |
python -m pip install --upgrade pip | |
- name: Install R | |
uses: r-lib/actions/setup-r@v2 | |
with: | |
r-version: '4.1.2' | |
- name: Install R dependencies | |
run: | | |
R -e "install.packages(c('Matrix'))" | |
R -e "install.packages(c('car'))" | |
R -e "install.packages(c('carData'))" | |
R -e "install.packages(c('lme4'))" | |
- name: Install python3 FiNNPy dependencies #dependencies are installed here to make sure R is found | |
run: | | |
pip install -r requirements.txt | |
- name: Build & install FiNNPy | |
run: | | |
pip install build | |
python -m build | |
python -m pip install . | |
- name: Test with unittest | |
run: | | |
python -m unittest discover -s finnpy/tests/ -p "*.py" |