Hide redundant color bars (https://www.nitrc.org/forum/forum.php?thre…

…ad_id=10001&forum_id=6713)

Resources/lut/Inferno.clut

@@ -0,0 +1,15 @@
+[FLT]
+min=0
+max=0
+[INT]
+numnodes=4
+[BYT]
+nodeintensity0=0
+nodeintensity1=64
+nodeintensity2=192
+nodeintensity3=255
+[RGBA255]
+nodergba0=0|0|4|0
+nodergba1=120|28|109|56
+nodergba2=237|105|37|80
+nodergba3=240|249|33|88

Resources/lut/Plasma.clut

@@ -0,0 +1,15 @@
+[FLT]
+min=0
+max=0
+[INT]
+numnodes=4
+[BYT]
+nodeintensity0=0
+nodeintensity1=64
+nodeintensity2=192
+nodeintensity3=255
+[RGBA255]
+nodergba0=13|8|135|0
+nodergba1=156|23|158|56
+nodergba2=237|121|83|80
+nodergba3=240|249|33|88

Resources/lut/PlasmaSeg.clut

@@ -0,0 +1,37 @@
+[FLT]
+min=0
+max=0
+[INT]
+numnodes=15
+[BYT]
+nodeintensity0=0
+nodeintensity1=1
+nodeintensity2=36
+nodeintensity3=37
+nodeintensity4=73
+nodeintensity5=74
+nodeintensity6=109
+nodeintensity7=110
+nodeintensity8=146
+nodeintensity9=147
+nodeintensity10=182
+nodeintensity11=183
+nodeintensity12=219
+nodeintensity13=220
+nodeintensity14=255
+[RGBA255]
+nodergba0=13|8|135|0
+nodergba1=13|8|135|1
+nodergba2=13|8|135|32
+nodergba3=85|16|147|32
+nodergba4=85|16|147|48
+nodergba5=156|23|158|48
+nodergba6=156|23|158|60
+nodergba7=197|72|121|60
+nodergba8=197|72|121|70
+nodergba9=237|121|83|70
+nodergba10=237|121|83|76
+nodergba11=239|185|58|76
+nodergba12=239|185|58|82
+nodergba13=240|249|33|82
+nodergba14=240|249|33|84

Resources/lut/Viridis.clut

@@ -0,0 +1,15 @@
+[FLT]
+min=0
+max=0
+[INT]
+numnodes=4
+[BYT]
+nodeintensity0=0
+nodeintensity1=64
+nodeintensity2=192
+nodeintensity3=255
+[RGBA255]
+nodergba0=68|1|84|0
+nodergba1=49|104|142|56
+nodergba2=53|183|121|80
+nodergba3=253|231|37|88

Resources/lut/unused/cwn_roybigBL.clut

@@ -0,0 +1,25 @@
+#Connectome Workbench: used with permission
+# https://github.com/Washington-University/workbench/tree/master/src/Palette
+[FLT]
+min=0
+max=0
+[INT]
+numnodes=8
+[BYT]
+nodeintensity0=0
+nodeintensity1=36
+nodeintensity2=73
+nodeintensity3=109
+nodeintensity4=146
+nodeintensity5=182
+nodeintensity6=219
+nodeintensity7=255
+[RGBA255]
+nodergba0=0|0|80|0
+nodergba1=0|0|170|36
+nodergba2=75|0|125|73
+nodergba3=125|0|160|109
+nodergba4=75|125|0|146
+nodergba5=0|200|0|182
+nodergba6=0|255|0|219
+nodergba7=0|255|255|255

Resources/lut/unused/cwp_roybigBL.clut

@@ -0,0 +1,25 @@
+#Connectome Workbench: used with permission
+# https://github.com/Washington-University/workbench/tree/master/src/Palette
+[FLT]
+min=0
+max=0
+[INT]
+numnodes=8
+[BYT]
+nodeintensity0=0
+nodeintensity1=36
+nodeintensity2=73
+nodeintensity3=109
+nodeintensity4=146
+nodeintensity5=182
+nodeintensity6=219
+nodeintensity7=255
+[RGBA255]
+nodergba0=60|0|0|0
+nodergba1=100|0|0|36
+nodergba2=150|0|0|73
+nodergba3=200|0|0|109
+nodergba4=255|0|0|146
+nodergba5=255|120|0|182
+nodergba6=255|200|0|219
+nodergba7=255|255|0|255

Resources/lut/unused/power_surf.clut

@@ -0,0 +1,43 @@
+[FLT]
+min=0
+max=0
+[INT]
+numnodes=18
+[BYT]
+nodeintensity0=0
+nodeintensity1=15
+nodeintensity2=30
+nodeintensity3=45
+nodeintensity4=60
+nodeintensity5=75
+nodeintensity6=90
+nodeintensity7=105
+nodeintensity8=120
+nodeintensity9=135
+nodeintensity10=150
+nodeintensity11=165
+nodeintensity12=180
+nodeintensity13=195
+nodeintensity14=210
+nodeintensity15=225
+nodeintensity16=240
+nodeintensity17=255
+[RGBA255]
+nodergba0=255|0|0|0
+nodergba1=0|0|153|15
+nodergba2=255|255|0|30
+nodergba3=255|179|102|45
+nodergba4=0|204|0|60
+nodergba5=255|75
+nodergba6=0|153|153|90
+nodergba7=0|0|0|105
+nodergba8=77|0|153|120
+nodergba9=51|255|255|135
+nodergba10=255|128|0|150
+nodergba11=153|51|255|165
+nodergba12=0|51|102|180
+nodergba13=51|255|51|195
+nodergba14=0|0|255|210
+nodergba15=255|255|204|225
+nodergba16=0|102|0|240
+nodergba17=64|64|64|255

Resources/script/basic_paint_surface.py

@@ -0,0 +1,12 @@
+import gl
+gl.resetdefaults()
+gl.azimuthelevation(70, 15)
+gl.meshload('BrainMesh_ICBM152Right.mz3')
+gl.overlayload('motor_4t95vol.nii.gz')
+gl.overlayminmax(1,2,12)
+gl.overlayload('motor_4t95vol.nii.gz')
+gl.overlayminmax(2,-1,-2)
+gl.colorbarvisible(1)
+gl.overlaytransparencyonbackground(25)
+gl.meshcurv()
+

Resources/script/fmri_mesh.py

@@ -0,0 +1,8 @@
+import gl
+gl.resetdefaults()
+gl.meshload('BrainMesh_ICBM152Right.mz3')
+gl.overlayload('motor_4t95mesh.mz3')
+gl.overlaycolorname(1, 'red')
+gl.shaderxray(1.0, 0.3)
+gl.azimuthelevation(110, 15)
+gl.meshcurv()

Resources/script/help.py

@@ -0,0 +1,7 @@
+import gl
+print(gl.__doc__)
+for key in dir( gl ):
+  if not key.startswith('_'):
+    x = getattr( gl, key ).__doc__
+    print(key+' (built-in function): ')
+    print(x)

Resources/script/hide_curves.py

@@ -0,0 +1,8 @@
+import gl
+gl.resetdefaults()
+gl.meshload('BrainMesh_ICBM152Left_smoothed.mz3')
+gl.meshcurv()
+gl.shadername('hidecurves')
+gl.overlayload('CIT168.mz3')
+gl.shaderforbackgroundonly(1)
+gl.shaderadjust('curvthreshhi', 0.44)

Resources/script/mesh.py

@@ -0,0 +1,9 @@
+import gl
+gl.resetdefaults()
+gl.meshload('mni152_2009.mz3')
+gl.overlayload('motor_4t95mesh.mz3')
+gl.clipazimuthelevation(0.37, 0, 140)
+gl.shaderambientocclusion(0.5)
+gl.azimuthelevation(90, 20)
+gl.shaderxray(1.0, 0.3)
+

Resources/script/newer_2017.py

@@ -0,0 +1,18 @@
+import gl
+gl.resetdefaults()
+gl.meshload('BrainMesh_ICBM152Right.mz3')
+gl.meshcurv()
+gl.overlayminmax(1,-1,1)
+gl.overlaycolorname(1,'surface')
+gl.overlayinvert(1,1)
+gl.overlayload('motor_4t95vol.nii.gz')
+gl.overlaycolorname(2,'kelvin')
+gl.overlayminmax(2,2,7)
+gl.overlayload('scalp.mz3')
+gl.overlaycolorname(3,'gold')
+gl.shaderxray(1.0, 0.9)
+gl.meshoverlayorder(1)
+gl.colorbarvisible(0)
+gl.shaderambientocclusion(0.05)
+gl.azimuthelevation(90, 15)
+gl.clipazimuthelevation(0.5, 0, 90)

Resources/script/node.py

@@ -0,0 +1,18 @@
+import gl
+gl.resetdefaults()
+gl.meshload('BrainMesh_ICBM152Left.mz3')
+gl.edgeload('LPBA40.edge')
+gl.clipazimuthelevation(0.3, 0, 130)
+gl.nodesize(6, 1)
+gl.edgesize(3,1)
+gl.nodehemisphere(-1)
+gl.azimuthelevation(250, 35)
+gl.edgecolor('actc',1)
+gl.nodecolor('blue',1)
+gl.nodethresh(1.0,1.0)
+gl.edgethresh(0.5,1.0)
+gl.meshcurv()
+gl.overlayminmax(1,-1,1)
+gl.overlaycolorname(1,'surface')
+gl.overlayinvert(1,1)
+gl.overlaytranslucent(1, 1)

Resources/script/shaders.py

@@ -0,0 +1,33 @@
+import gl
+gl.resetdefaults()
+kframesperrotation = 180
+gl.meshcolor(210, 148, 148)
+gl.meshload('BrainMesh_ICBM152Left.mz3')
+gl.edgeload('LPBA40.edge')
+gl.clipazimuthelevation(0.3, 0, 130)
+gl.nodesize(6, 1)
+gl.edgesize(3,1)
+gl.nodehemisphere(-1)
+gl.azimuthelevation(250, 35)
+gl.edgecolor('actc',1)
+gl.nodecolor('red',1)
+gl.nodethresh(1.0,1.0)
+gl.edgethresh(0.5,1.0)
+for i in range(1, kframesperrotation * 5):
+  s = 0.5 + (i+0.0)/72
+  if (s <= 1):
+    gl.cameradistance(s)
+  if ((i % kframesperrotation) == 0):
+    rot = (i / kframesperrotation)
+    if rot == 1:
+        gl.shadername('metal')
+    elif rot == 2:
+        gl.shadername('wireframe')
+    elif rot == 3:
+        gl.shadername('toon')
+        gl.shaderambientocclusion(0)
+    else :
+        gl.shadername('wire')
+        gl.shaderforbackgroundonly(1)
+  gl.azimuth( int(round(360.0/kframesperrotation)))
+  gl.wait(20)