Refactored package organization

mzmine · Nov 2, 2023 · cadf03f · cadf03f
1 parent f7f8475
commit cadf03f
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Showing 14 changed files with 3 additions and 3 deletions.
diff --git a/library_spectra_validation/.gitignore → ...app/library_spectra_validation/.gitignore b/library_spectra_validation/.gitignore → ...app/library_spectra_validation/.gitignore
diff --git a/library_spectra_validation/README.md → ..._app/library_spectra_validation/README.md b/library_spectra_validation/README.md → ..._app/library_spectra_validation/README.md
diff --git a/streamlit_app/library_spectra_validation/__init__.py b/streamlit_app/library_spectra_validation/__init__.py
diff --git a/library_spectra_validation/__version__.py → ...library_spectra_validation/__version__.py b/library_spectra_validation/__version__.py → ...library_spectra_validation/__version__.py
diff --git a/library_spectra_validation/edit_metadata.py → ...brary_spectra_validation/edit_metadata.py b/library_spectra_validation/edit_metadata.py → ...brary_spectra_validation/edit_metadata.py
diff --git a/library_spectra_validation/filters.py → ...app/library_spectra_validation/filters.py b/library_spectra_validation/filters.py → ...app/library_spectra_validation/filters.py
diff --git a/...ary_spectra_validation/library_handler.py → ...ary_spectra_validation/library_handler.py b/...ary_spectra_validation/library_handler.py → ...ary_spectra_validation/library_handler.py
@@ -1,7 +1,7 @@
 from matchms.importing import load_spectra
 from matchms.filtering.SpectrumProcessor import SpectrumProcessor
-from filters import PRIMARY_FILTERS
-from validation_pipeline import Modification, SpectrumRepairer, SpectrumValidator
+from library_spectra_validation.filters import PRIMARY_FILTERS
+from library_spectra_validation.validation_pipeline import Modification, SpectrumRepairer, SpectrumValidator
 
 class LibraryHandler:
     """Stores the 3 different types of spectra. Correct, repaired, wrong.

diff --git a/library_spectra_validation/setup.py → ...t_app/library_spectra_validation/setup.py b/library_spectra_validation/setup.py → ...t_app/library_spectra_validation/setup.py
diff --git a/...idation/tests/examples/Broken_records.txt → ...idation/tests/examples/Broken_records.txt b/...idation/tests/examples/Broken_records.txt → ...idation/tests/examples/Broken_records.txt
diff --git a/...tion/tests/examples/test_case_correct.mgf → ...tion/tests/examples/test_case_correct.mgf b/...tion/tests/examples/test_case_correct.mgf → ...tion/tests/examples/test_case_correct.mgf
diff --git a/...dation/tests/examples/test_case_wrong.mgf → ...dation/tests/examples/test_case_wrong.mgf b/...dation/tests/examples/test_case_wrong.mgf → ...dation/tests/examples/test_case_wrong.mgf
diff --git a/..._validation/tests/test_library_handler.py → ..._validation/tests/test_library_handler.py b/..._validation/tests/test_library_handler.py → ..._validation/tests/test_library_handler.py
diff --git a/...spectra_validation/validation_pipeline.py → ...spectra_validation/validation_pipeline.py b/...spectra_validation/validation_pipeline.py → ...spectra_validation/validation_pipeline.py
diff --git a/streamlit_app/pages/1_File_Import.py b/streamlit_app/pages/1_File_Import.py
@@ -1,10 +1,10 @@
+from library_spectra_validation.library_handler import LibraryHandler
 import os
 
 import streamlit as st
 import pandas as pd
 from matchms.importing import load_from_mgf
 from tempfile import NamedTemporaryFile
-from library_spectra_validation.library_handler import LibraryHandler
 
 
 st.set_page_config(