a few minor edits #5
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| name: R | |
| on: | |
| push: | |
| branches-ignore: [gh-pages] | |
| paths: | |
| - ".github/workflows/R.yaml" | |
| - "src/**" | |
| - "r/**" | |
| pull_request: | |
| branches-ignore: [gh-pages] | |
| paths: | |
| - ".github/workflows/R.yaml" | |
| - "src/**" | |
| - "r/**" | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| _R_CHECK_FORCE_SUGGESTS_: false | |
| _R_CHECK_CRAN_INCOMING_REMOTE_: false | |
| concurrency: | |
| group: ${{ github.repository }}-${{ github.head_ref || github.sha }}-${{ github.workflow }} | |
| cancel-in-progress: true | |
| jobs: | |
| R-CMD-check: | |
| if: "! contains(github.event.head_commit.message, '[skip ci]')" | |
| runs-on: ${{ matrix.config.os }} | |
| name: Check ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| # When set to true, GitHub cancels all in-progress jobs if any matrix job fails. | |
| fail-fast: true | |
| matrix: | |
| config: | |
| - {os: windows-latest, r: 'release'} | |
| - {os: macOS-latest, r: 'release'} | |
| - {os: ubuntu-22.04, r: 'release'} | |
| - {os: ubuntu-20.04, r: '3.6'} | |
| # Use latest ubuntu to make it easier to install dependencies | |
| - {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - name: Disable autocrlf | |
| if: runner.os == 'Windows' | |
| run: git config --global core.autocrlf false | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::remotes, any::rcmdcheck | |
| needs: check | |
| working-directory: r | |
| - name: Install macos dependencies | |
| if: runner.os == 'macOS' | |
| run: brew install gsl gawk automake | |
| - name: Check (CRAN) | |
| env: | |
| NOT_CRAN: false | |
| run: | | |
| options(crayon.enabled = TRUE) | |
| rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check", timeout = 360) | |
| shell: Rscript {0} | |
| working-directory: r | |
| - name: Check (NOT CRAN) | |
| if: success() | |
| env: | |
| NOT_CRAN: true | |
| run: | | |
| options(crayon.enabled = TRUE) | |
| rcmdcheck::rcmdcheck(args = c("--no-manual", "--run-donttest", "--run-dontrun", "--timings"), error_on = "warning", check_dir = "check", timeout = 360) | |
| shell: Rscript {0} | |
| working-directory: r | |
| - name: Show testthat output | |
| if: failure() | |
| run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true | |
| shell: bash | |
| working-directory: r | |
| - name: Install package | |
| run: | | |
| remotes::install_local(".", force = TRUE, upgrade = "never", build_manual = TRUE, build_vignettes = TRUE) | |
| shell: Rscript {0} | |
| working-directory: r | |
| - name: Upload check results | |
| if: failure() | |
| uses: actions/upload-artifact@main | |
| with: | |
| name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
| path: r/check | |
| rchk: | |
| needs: R-CMD-check | |
| name: rchk ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| runs-on: ${{ matrix.config.os }} | |
| strategy: | |
| matrix: | |
| config: | |
| - {os: ubuntu-latest, r: 'release'} | |
| container: | |
| image: rhub/ubuntu-rchk | |
| options: --user=root | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| r-version: ${{ matrix.config.r }} | |
| - uses: r-lib/actions/run-rchk@v2 | |
| with: | |
| setup-only: true | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::rcmdcheck, local::. | |
| needs: check | |
| working-directory: r | |
| - uses: r-lib/actions/run-rchk@v2 | |
| with: | |
| run-only: true | |
| coverage: | |
| needs: R-CMD-check | |
| name: Coverage ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| runs-on: ${{ matrix.config.os }} | |
| strategy: | |
| matrix: | |
| config: | |
| - {os: ubuntu-latest, r: 'release'} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| CODECOV_TOKEN: ${{secrets.CODECOV_TOKEN}} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| r-version: ${{ matrix.config.r }} | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::covr | |
| needs: coverage | |
| working-directory: 'r' | |
| - name: Test coverage | |
| env: | |
| NOT_CRAN: false | |
| run: | | |
| setwd("r/") | |
| covr::codecov(type="all", quiet=FALSE, commentDonttest = FALSE, commentDontrun = FALSE) | |
| shell: Rscript {0} | |
| pkgdown: | |
| needs: R-CMD-check | |
| if: contains(' | |
| refs/heads/master | |
| refs/heads/main | |
| ', github.ref) && github.event_name == 'push' | |
| name: pkgdown ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| concurrency: ci-${{ github.ref }} # Recommended if you intend to make multiple deployments in quick succession. | |
| runs-on: ${{ matrix.config.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: ubuntu-latest, r: 'release'} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::pkgdown, local::. | |
| needs: website | |
| working-directory: r | |
| - name: Deploy package Deploy 🚀 | |
| if: success() && runner.os == 'Linux' && matrix.config.r == 'release' && github.event_name == 'push' | |
| run: | | |
| git config --local user.email "[email protected]" | |
| git config --local user.name "GitHub Actions" | |
| Rscript -e 'pkgdown::deploy_to_branch(new_process = FALSE, run_dont_run = TRUE, subdir = "r")' | |
| shell: bash {0} | |
| working-directory: r | |