MAINT: Update CIs #8
Workflow file for this run
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| name: 'Tests' | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.number }}-${{ github.event.ref }} | |
| cancel-in-progress: true | |
| on: # yamllint disable-line rule:truthy | |
| push: | |
| branches: ["master", "maint/*"] | |
| pull_request: | |
| branches: ["master", "maint/*"] | |
| permissions: | |
| contents: read | |
| jobs: | |
| pytest: | |
| name: '${{ matrix.os }} / ${{ matrix.python }}' | |
| timeout-minutes: 70 | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| env: | |
| MNE_HCP_N_RUNS: '3' | |
| SUBJECTS_DIR: '${{ github.workspace }}/subjects' | |
| MNE_LOGGING_LEVEL: warning | |
| strategy: | |
| matrix: | |
| include: | |
| - os: ubuntu-latest | |
| python: '3.8' # TODO: Bump to 3.12 | |
| # - os: macos-latest # arm64 (Apple Silicon) | |
| # python: '3.12' | |
| # kind: mamba | |
| # - os: macos-13 # latest Intel release | |
| # python: '3.12' | |
| # kind: mamba | |
| # - os: windows-latest | |
| # python: '3.12' | |
| # - os: ubuntu-20.04 | |
| # python: '3.8' | |
| fail-fast: false | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python }} | |
| - run: pip install --upgrade pip setuptools | |
| # TODO: shouldn't need to install NumPy first or pin it (distutils gone in 2.0), bad build reqs | |
| - run: pip install --upgrade "numpy<2" s3cmd mne scikit-learn nose pytest pytest-cov "mne<0.24" nibabel | |
| # TODO: Relax this pin | |
| # TODO: Remove nose dependency | |
| - run: pip install --no-build-isolation -ve . | |
| - run: openssl aes-256-cbc -K "${{ secrets.encrypted_73bd2a498087_key }}" -iv "${{ secrets.encrypted_73bd2a498087_iv }}" -in .s3cfg.enc -out ~/.s3cfg -d | |
| - run: python -c "from pathlib import Path; assert (Path('~').expanduser() / '.s3cfg').is_file()" | |
| - run: mkdir ~/mne-hcp-data | |
| - run: s3cmd get s3://mne-hcp-testing-data/mne-hcp-testing.tar.gz ~/mne-hcp-data/ | |
| - run: cd ~/mne-hcp-data/ && tar -xvzf mne-hcp-testing.tar.gz | |
| - run: find ~/mne-hcp-data/mne-hcp-testing/105923 -name "*" > output.txt && cat output.txt | wc -l && head output.txt | |
| - run: mkdir -p "${{ env.SUBJECTS_DIR}}" && python -c "import mne; mne.datasets.fetch_fsaverage(subjects_dir='${{ env.SUBJECTS_DIR }}')" | |
| # TODO: Move this to the top (toward bottom to speed up testing of steps above) | |
| - uses: pyvista/setup-headless-display-action@main | |
| with: | |
| qt: true | |
| pyvista: false | |
| - run: pytest -rfEXs --cov-report= --tb=short --durations 30 -v --cov=hcp --cov-report xml hcp | |
| - uses: codecov/codecov-action@v4 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| if: success() |