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Jupyter Notebook 6 1 Updated Nov 13, 2024

Kun-peng: an ultra-fast, low-memory footprint and accurate taxonomy classifier for all

Rust 118 16 Updated Dec 3, 2024

An extremely fast Python package and project manager, written in Rust.

Rust 36,521 991 Updated Jan 21, 2025
Python 94 14 Updated Jun 13, 2024
Nextflow 7 1 Updated Jan 21, 2025

A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV

Go 390 32 Updated Nov 14, 2024

Unleash the full power of your k-mers!

OCaml 11 1 Updated Jan 5, 2025

Tidy Plots for Scientific Papers

R 383 11 Updated Jan 20, 2025
Python 43 5 Updated Mar 10, 2024

Generate basic stats for an assembly.

Python 10 Updated Feb 12, 2023

Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction

Jupyter Notebook 233 57 Updated Jan 3, 2025

A 'ggplot2' Extension for Consistent Axis Alignment

R 227 8 Updated Jan 21, 2025

sensitive and precise assembly of short sequencing reads

C 152 14 Updated Oct 11, 2024

MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.

C++ 131 4 Updated Dec 4, 2024
Jupyter Notebook 6 3 Updated Aug 6, 2024

R package for genome size prediction

R 4 Updated Nov 28, 2024

Code and data for Williams, Zipkin & Brodie 2024 (Nature Communications)

R 4 1 Updated Mar 1, 2024

Bioinformatics tool for Locus Visualisation

Python 83 3 Updated Jan 17, 2025

colorblind friendly color palettes and ggplot2 graphic system extensions for publication-quality scientific figures

R 114 9 Updated Dec 6, 2024

Package management made easy

Rust 3,731 210 Updated Jan 21, 2025

Snakemake Pipeline to check the requirements for a prokaryotic assembly to be included in the SeqCode initiative

Python 2 Updated Dec 5, 2024

LexicMap: efficient sequence alignment against millions of prokaryotic genomes

Go 126 4 Updated Jan 17, 2025

Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly

Python 37 2 Updated Jan 16, 2025

Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes

Python 34 2 Updated Dec 18, 2024

Metapresence is a Python tool to calculate metrics to assess the evenness of the coverage distribution on DNA sequences, in order to infer their presence in a given sample.

Python 8 Updated Sep 24, 2024

This is a repository for CAMPER.

Python 12 Updated Mar 18, 2024

MICROPHERRET: MICRObial PHEnotypic tRait ClassifieR using machine lEarning Techniques

Jupyter Notebook 8 2 Updated Jul 4, 2024

BEAV: Bacterial Element Annotation reVamped

Shell 60 4 Updated Oct 31, 2024

A modern resume template written in Typst, inspired by Awesome-CV

Typst 296 57 Updated Jan 20, 2025
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