Fetch raxml-ng assets

metagenopolis · Apr 6, 2024 · cee67f2 · cee67f2
1 parent 2fe60b7
commit cee67f2
Showing 1 changed file with 14 additions and 3 deletions.
diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
@@ -8,13 +8,24 @@ jobs:
     strategy:
       matrix:
         python-version: ["3.10", "3.11"]
-        os: [ubuntu-22.04, macos-latest]
+        os: ['ubuntu-22.04', 'macos-latest']
     steps:
       - uses: actions/checkout@v4
       - uses: ConorMacBride/install-package@v1
         with:
           brew: bowtie2 bcftools bedtools raxml-ng
-          apt: bowtie2 bcftools bedtools raxml-ng
+          apt: bowtie2 bcftools bedtools
+      -  name: Fetch GitHub Release Assets
+       uses: amkozlov/raxml-ng@master
+        with:
+          repo: 'amkozlov/raxml-ng'
+          version: 'tags/1.2.1'
+          file: 'raxml-ng_v1.2.1_linux_x86_64.zip'
+          token: ${{ secrets.GITHUB_TOKEN }}
+        if: matrix.os == 'ubuntu-22.04'
+      - name: Extract zip
+        run: unzip raxml-ng_v1.2.1_linux_x86_64 -d /usr/local/bin
+        if: matrix.os == 'ubuntu-22.04'
       - name: Install Python
         uses: actions/setup-python@v4
         # see details (matrix, python-version, python-version-file, etc.)
@@ -29,4 +40,4 @@ jobs:
         uses: codecov/[email protected]
         with:
           token: ${{ secrets.CODECOV_TOKEN }}
-          slug: metagenopolis/meteor
+          slug: metagenopolis/meteor