limit bgzipreader

metagenopolis · Sep 3, 2024 · af3a405 · af3a405
1 parent 0101b49
commit af3a405
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/meteor/variantcalling.py b/meteor/variantcalling.py
@@ -453,7 +453,7 @@ def execute(self) -> None:
         logging.info("Run freebayes")
         startfreebayes = perf_counter()
         with reference_file.open("rb") as ref_fh:
-            with bgzip.BGZipReader(ref_fh) as reader:
+            with bgzip.BGZipReader(ref_fh, num_threads=self.meteor.threads) as reader:
                 decompressed_reference = reader.read()
         with NamedTemporaryFile(suffix=".fasta", delete=False) as temp_ref_file:
             temp_ref_file.write(decompressed_reference)