No mac os for now #261
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| name: testing | |
| on: [push, pull_request] | |
| jobs: | |
| pytest: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.10", "3.11", "3.12"] | |
| # os: [ubuntu-22.04, macos-latest] | |
| os: [ubuntu-22.04] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: ConorMacBride/install-package@v1 | |
| with: | |
| brew: bowtie2 bcftools bedtools raxml-ng | |
| apt: bowtie2 bcftools bedtools | |
| - name: Fetch GitHub Release Assets | |
| uses: dsaltares/fetch-gh-release-asset@master | |
| with: | |
| repo: 'amkozlov/raxml-ng' | |
| version: 'tags/1.2.2' | |
| file: 'raxml-ng_v1.2.2_linux_x86_64.zip' | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| if: matrix.os == 'ubuntu-22.04' | |
| - name: Extract zip | |
| run: unzip -o raxml-ng_*.zip -d /usr/local/bin && chmod +x /usr/local/bin/raxml-ng | |
| if: matrix.os == 'ubuntu-22.04' | |
| - name: Install Python | |
| uses: actions/setup-python@v4 | |
| - name: Install poetry | |
| uses: abatilo/actions-poetry@v2 | |
| - name: Install the project dependencies | |
| run: poetry install --only test -C meteor | |
| - name: Run the automated tests (for example) | |
| run: poetry run -C meteor pytest --cov=meteor --cov-report xml | |
| - name: Upload coverage reports to Codecov | |
| uses: codecov/[email protected] | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| slug: metagenopolis/meteor |