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Bad tree #1

Workflow file for this run

.github/workflows/meteor.yml at 64a39fc
name: meteor
on:
push:
branches:
- main
tags:
- '*'
pull_request:
branches:
- dev
env:
PIP_CACHE_DIR: ${{ github.workspace }}/.cache/pip
jobs:
pytest:
runs-on: ubuntu-latest
strategy:
matrix:
python-version: [3.11, 3.10, 3.12]
include:
- python-version: 3.12
allow-failure: true
steps:
- uses: actions/checkout@v2
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python-version }}
- name: Install Poetry
run: pip install poetry
- name: Install dependencies
run: poetry install --only test -C meteor
- name: Run pytest
run: poetry run -C meteor pytest
if: matrix.python-version != '3.12' # Skip coverage for Python 3.12
- name: Run pytest with coverage
run: |
poetry run -C meteor pytest --cov=meteor --cov-report xml
poetry run -C meteor coverage report
if: matrix.python-version == '3.11'
continue-on-error: ${{ matrix.allow-failure }}
- name: Upload coverage artifact
uses: actions/upload-artifact@v2
if: matrix.python-version == '3.11'
with:
name: coverage-report
path: coverage.xml
flake8:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
- name: Set up Python
uses: actions/setup-python@v2
with:
python-version: '3.x'
- name: Install Flake8
run: pip install flake8
- name: Run Flake8
run: flake8 --max-line-length=120 meteor
continue-on-error: true
mypy:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
- name: Set up Python
uses: actions/setup-python@v2
with:
python-version: '3.x'
- name: Install Poetry
run: pip install poetry
- name: Install dependencies
run: poetry install --only mypy -C meteor
- name: Run Mypy
run: poetry run mypy meteor
continue-on-error: true
pylint:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
- name: Set up Python
uses: actions/setup-python@v2
with:
python-version: '3.x'
- name: Install Poetry
run: pip install poetry
- name: Install dependencies
run: poetry install --only pylint -C meteor
- name: Run Pylint and generate badge
run: |
mkdir ./pylint
poetry run pylint --rcfile=.pylintrc --exit-zero --output-format=text meteor | tee ./pylint/pylint.log
PYLINT_SCORE=$(sed -n 's/^Your code has been rated at $[-0-9.]*$\/.*/\1/p' ./pylint/pylint.log)
poetry run anybadge --label=Pylint --file=pylint/pylint.svg --value=$PYLINT_SCORE 2=red 4=orange 8=yellow 10=green
echo "Pylint score is $PYLINT_SCORE"
continue-on-error: true
- name: Upload Pylint artifact
uses: actions/upload-artifact@v2
with:
name: pylint-report
path: ./pylint/
run:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
- name: Set up Python
uses: actions/setup-python@v2
with:
python-version: '3.x'
- name: Install Poetry
run: pip install poetry
- name: Build and publish to GitLab PyPI
run: |
poetry config repositories.gitlab ${{ secrets.CI_API_V4_URL }}/projects/${{ github.repository_id }}/packages/pypi
poetry build -C meteor
poetry publish -C meteor --repository gitlab -u gitlab-ci-token -p ${{ secrets.CI_JOB_TOKEN }}
if: startsWith(github.ref, 'refs/tags/')
build_conda:
runs-on: ubuntu-latest
container:
image: continuumio/miniconda3:latest
steps:
- uses: actions/checkout@v2
- name: Configure Conda
run: |
conda config --add channels conda-forge
conda config --add channels bioconda
conda config --set anaconda_upload yes
conda update -n base -c defaults conda
conda install -y conda-verify
conda install -y anaconda-client
conda install -y conda-build
conda install -y git
- name: Login to Anaconda
run: anaconda login --hostname "$DOCKER_HOST" --username "$DOCKER_USER" --password "$DOCKER_PASS"
- name: Build Conda package
run: conda build conda_recipe
- name: Logout from Anaconda
run: anaconda logout
if: startsWith(github.ref, 'refs/tags/')