Publish meteor #61
Workflow file for this run
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| name: Publish meteor | |
| on: | |
| release: | |
| types: [published] | |
| jobs: | |
| meteortest: | |
| if: ${{ github.event.release.prerelease }} | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: ConorMacBride/install-package@v1 | |
| with: | |
| brew: bowtie2 freebayes | |
| apt: bowtie2 freebayes | |
| - name: Install Python | |
| uses: actions/setup-python@v4 | |
| - name: Install poetry | |
| uses: abatilo/actions-poetry@v2 | |
| - name: Install the project dependencies | |
| run: poetry install -C meteor | |
| - name: Run the automated tests (for example) | |
| run: poetry run -C meteor meteor test | |
| docker: | |
| if: ${{ !github.event.release.prerelease }} | |
| needs: conda | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Set up QEMU | |
| uses: docker/setup-qemu-action@v3 | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Login to Docker Hub | |
| uses: docker/login-action@v3 | |
| with: | |
| username: ${{ secrets.DOCKER_USER }} | |
| password: ${{ secrets.DOCKER_TOKEN }} | |
| - name: Build and push | |
| uses: docker/build-push-action@v5 | |
| with: | |
| context: . | |
| push: true | |
| platforms: linux/amd64 | |
| provenance: false | |
| tags: | | |
| ${{ secrets.DOCKER_USER }}/meteor:${{ github.ref_name }} | |
| ${{ secrets.DOCKER_USER }}/meteor:latest | |
| conda: | |
| if: ${{ !github.event.release.prerelease }} | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-update-conda: true | |
| channels: conda-forge,bioconda | |
| - name: Build and upload the conda package | |
| shell: bash -el {0} | |
| run: | | |
| conda config --set anaconda_upload yes | |
| conda install -y anaconda-client | |
| conda install -y conda-build | |
| conda install -y conda-verify | |
| conda build --token ${{ secrets.ANACONDA_TOKEN }} conda_recipe | |
| pypi: | |
| if: ${{ !github.event.release.prerelease }} | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install Python | |
| uses: actions/setup-python@v4 | |
| # see details (matrix, python-version, python-version-file, etc.) | |
| # https://github.com/actions/setup-python | |
| - name: Install poetry | |
| uses: abatilo/actions-poetry@v2 | |
| - name: Build and publish to PyPI | |
| run: | | |
| poetry config http-basic.pypi __token__ ${{ secrets.PYPI_TOKEN }} | |
| poetry build -C meteor | |
| poetry publish --skip-existing -C meteor | |