0.6.0

Bug Fixes

• clowm: remove trailing whitespace in parameter group name in nextflow_schema.json

Features

• clowm: adapt clowm doc to latest mgtk release
• config: provide function to dynamically assign resources based on number of attempts (#380)

0.5.5

Bug Fixes

• clowm: add whitespace for empty parameter values

0.5.4

Bug Fixes

• clowm: fix wrong default parameter for megahit RAM mode selection

Features

• clowm: Add ONT modules in nextflow_schema.json

0.5.3

Bug Fixes:

• Quality Control: Fastq files are now split before provided as input to porechop

0.5.2

Bug Fixes

• clowm: clowm related files are now handled in dev and master branch

0.5.1

Bug Fixes

• magAttributes: create checkm2 database dirrectory only when necessary

0.5.0

Bug Fixes

• README: use correct wiki link
• output: fix owner permissions (#376)
• tests: test quickstart without checkout
• wiki: add mkdocs mike explicitly as plugin

Documentation

• toolkit: add introduction to README

Features

• config: allow nextflow run usage (#373)
• docker: use host network instead of docker bridge

0.4.5

Bug Fixes

• cooccurrence: do not run cooccurrence on one bin
• dereplication: do not fail if just one species available

Documentation

• getting_started: use correct yaml in full pipeline tutorial

Features

• wiki: add more files for tutorial testing

0.4.4

Bug Fixes

• test: add missing tests for quickstart

0.4.3

Bug Fixes

• annotation: mmseqs taxonomy should consider container ram limit
• ci: reference branch instead of pr
• config: remove coverage filter for mmseqs
• config: consider partial genes in mmseqs
• cplex: pin python-libsbml version
• input: increase max errors for NCBI SRA requests
• tests: use correct bash statement for skipping tests
• tests: ignore test that are unnecessary

Features

• ci: only use workflow dispatch
• tests: refactor tests with external dependency
• wiki: add initial documentation for github pages