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set up renv

set up renv #9

Workflow file for this run

# This is the file that controls the GitHub Action that automatically renders and publishes our website
# whenever changes our made to the "main" branch of the GitHub repository
# Documentation for Quarto GitHub actions is here: https://quarto.org/docs/publishing/github-pages.html#github-action
# Also here: https://github.com/quarto-dev/quarto-actions
# It is triggered when changes are made to the "main" branch
on:
workflow_dispatch:
push:
branches: main
name: Quarto Publish
jobs:
build-deploy:
runs-on: ubuntu-latest
permissions:
contents: write
# These are the steps that are taken when changes are made
steps:
- name: Check out repository
uses: actions/checkout@v4
# https://github.com/quarto-dev/quarto-actions/tree/main/setup
- name: Set up Quarto
uses: quarto-dev/quarto-actions/setup@v2
with:
tinytex: true
# # This installs a fresh version of Python
# - name: Install Python and Dependencies
# uses: actions/setup-python@v5
# with:
# python-version: '3.10'
# cache: 'pip'
# working-directory: website
# - run: pip install jupyter
# - run: pip install -r requirements.txt
# This installs a fresh version of Python
- name: Install Python and Dependencies
uses: actions/setup-python@v5
with:
python-version: '3.10'
cache: 'pip'
- name: Install Python Dependencies
run: |
pip install jupyter
pip install -r requirements.txt
working-directory: website
# This installs a fresh version of R
# https://github.com/r-lib/actions/tree/v2/setup-r
- name: Install R
uses: r-lib/actions/setup-r@v2
with:
r-version: '4.3.2'
- name: Cache R packages
uses: actions/cache@v4
with:
path: /home/runner/work/_temp/Library
key: ${{ runner.os }}-R-${{ hashFiles('**/renv.lock') }}
restore-keys: |
${{ runner.os }}-R-
# This installs all needed R packages (dependencies) for the website
# This is created with renv
# You can read more here: https://rstudio.github.io/renv/articles/renv.html
# You can basically take a snapshot of your current environment, and it puts it in renv/ and renv.lock
- name: Install R Dependencies
uses: r-lib/actions/setup-renv@v2
with:
cache-version: 1
# Because of the way we've reorganized files, I'm specifying that renv/ lives in the website/ directory (as opposed to the current working directory or root)
working-directory: website
# Render and publish the website
# If file paths are wrong, that will break the whole site, so really try to read through the errors
#
- name: Render and Publish
uses: quarto-dev/quarto-actions/publish@v2
with:
# Because of the way we've reorganized files, I'm specifying that the site lives in the website/ directory (as opposed to the current working directory or root)
path: website
# Pushes to gh-pages, which controls the website
target: gh-pages
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}