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mattclifford1 · Nov 27, 2024 · 8120fe0 · 8120fe0
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diff --git a/IQM_Vis.transforms.html b/IQM_Vis.transforms.html
@@ -22,7 +22,7 @@
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
     <link rel="next" title="IQM_Vis.metrics package" href="IQM_Vis.metrics.html" />
-    <link rel="prev" title="Tutorial 3: Customisation Details" href="notebooks/Tutorial_3-Advanced-Customisations.html" /> 
+    <link rel="prev" title="Tutorial 4: Running a 2AFC Experiment" href="notebooks/Tutorial_4-running_a_2AFC_experiment.html" /> 
 </head>
 
 <body class="wy-body-for-nav"> 
@@ -459,7 +459,7 @@ <h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this
            </div>
           </div>
           <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
-        <a href="notebooks/Tutorial_3-Advanced-Customisations.html" class="btn btn-neutral float-left" title="Tutorial 3: Customisation Details" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="notebooks/Tutorial_4-running_a_2AFC_experiment.html" class="btn btn-neutral float-left" title="Tutorial 4: Running a 2AFC Experiment" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
         <a href="IQM_Vis.metrics.html" class="btn btn-neutral float-right" title="IQM_Vis.metrics package" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
     </div>
 

diff --git a/Tutorials.html b/Tutorials.html
@@ -59,6 +59,8 @@
 <li class="toctree-l2"><a class="reference internal" href="notebooks/Tutorial_1-making_the_UI.html">Tutorial 1: Making the UI</a></li>
 <li class="toctree-l2"><a class="reference internal" href="notebooks/Tutorial_2-Customisation.html">Tutorial 2: Simple Customisation</a></li>
 <li class="toctree-l2"><a class="reference internal" href="notebooks/Tutorial_3-Advanced-Customisations.html">Tutorial 3: Customisation Details</a></li>
+<li class="toctree-l2"><a class="reference internal" href="notebooks/Tutorial_4-running_a_2AFC_experiment.html">Tutorial 4: Running a 2AFC Experiment</a></li>
+<li class="toctree-l2"><a class="reference internal" href="notebooks/Tutorial_4-running_a_2AFC_experiment.html#Visualising-the-experiment-results">Visualising the experiment results</a></li>
 </ul>
 </li>
 </ul>
@@ -108,6 +110,10 @@ <h1>Tutorials<a class="headerlink" href="#tutorials" title="Permalink to this he
   <div><img alt="" src="./_static/nbsphinx-no-thumbnail.svg"></div>
   <div>Tutorial 3: Customisation Details</div>
 </a>
+<a class="reference internal" href="notebooks/Tutorial_4-running_a_2AFC_experiment.html">
+  <div><img alt="" src="./_static/nbsphinx-no-thumbnail.svg"></div>
+  <div>Tutorial 4: Running a 2AFC Experiment</div>
+</a>
 </div>
 </div>
 </section>

diff --git a/_autosummary/IQM_Vis.metrics.NLPD_torch.html b/_autosummary/IQM_Vis.metrics.NLPD_torch.html
@@ -93,13 +93,10 @@
 <col style="width: 90%" />
 </colgroup>
 <tbody>
-<tr class="row-odd"><td><p><a class="reference internal" href="IQM_Vis.metrics.NLPD_torch.layers.html#module-IQM_Vis.metrics.NLPD_torch.layers" title="IQM_Vis.metrics.NLPD_torch.layers"><code class="xref py py-obj docutils literal notranslate"><span class="pre">IQM_Vis.metrics.NLPD_torch.layers</span></code></a></p></td>
-<td><p></p></td>
-</tr>
-<tr class="row-even"><td><p><a class="reference internal" href="IQM_Vis.metrics.NLPD_torch.pyramids.html#module-IQM_Vis.metrics.NLPD_torch.pyramids" title="IQM_Vis.metrics.NLPD_torch.pyramids"><code class="xref py py-obj docutils literal notranslate"><span class="pre">IQM_Vis.metrics.NLPD_torch.pyramids</span></code></a></p></td>
+<tr class="row-odd"><td><p><a class="reference internal" href="IQM_Vis.metrics.NLPD_torch.pyramids.html#module-IQM_Vis.metrics.NLPD_torch.pyramids" title="IQM_Vis.metrics.NLPD_torch.pyramids"><code class="xref py py-obj docutils literal notranslate"><span class="pre">IQM_Vis.metrics.NLPD_torch.pyramids</span></code></a></p></td>
 <td><p>The <code class="xref py py-mod docutils literal notranslate"><span class="pre">expert.layers.wavelet_transformation</span></code> module holds classes of layers for wavelet transformations.</p></td>
 </tr>
-<tr class="row-odd"><td><p><a class="reference internal" href="IQM_Vis.metrics.NLPD_torch.utils.html#module-IQM_Vis.metrics.NLPD_torch.utils" title="IQM_Vis.metrics.NLPD_torch.utils"><code class="xref py py-obj docutils literal notranslate"><span class="pre">IQM_Vis.metrics.NLPD_torch.utils</span></code></a></p></td>
+<tr class="row-even"><td><p><a class="reference internal" href="IQM_Vis.metrics.NLPD_torch.utils.html#module-IQM_Vis.metrics.NLPD_torch.utils" title="IQM_Vis.metrics.NLPD_torch.utils"><code class="xref py py-obj docutils literal notranslate"><span class="pre">IQM_Vis.metrics.NLPD_torch.utils</span></code></a></p></td>
 <td><p></p></td>
 </tr>
 </tbody>

diff --git a/_autosummary/IQM_Vis.metrics.NLPD_torch.layers.html b/_autosummary/IQM_Vis.metrics.NLPD_torch.layers.html
@@ -84,8 +84,8 @@
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
            <div itemprop="articleBody">
 
-  <section id="module-IQM_Vis.metrics.NLPD_torch.layers">
-<span id="iqm-vis-metrics-nlpd-torch-layers"></span><h1>IQM_Vis.metrics.NLPD_torch.layers<a class="headerlink" href="#module-IQM_Vis.metrics.NLPD_torch.layers" title="Permalink to this headline"></a></h1>
+  <section id="iqm-vis-metrics-nlpd-torch-layers">
+<h1>IQM_Vis.metrics.NLPD_torch.layers<a class="headerlink" href="#iqm-vis-metrics-nlpd-torch-layers" title="Permalink to this headline"></a></h1>
 </section>
 
 

diff --git a/_sources/Tutorials.rst.txt b/_sources/Tutorials.rst.txt
@@ -5,4 +5,5 @@ Tutorials
   notebooks/Tutorial_1-making_the_UI
   notebooks/Tutorial_2-Customisation
   notebooks/Tutorial_3-Advanced-Customisations
-  notebooks/Tutorial_4-running_an_experiment
+  notebooks/Tutorial_4-running_a_2AFC_experiment
+  notebooks/Tutorial_4-running_a_JND_experiment
diff --git a/_sources/_autosummary/IQM_Vis.metrics.NLPD_torch.pyramids.rst.txt b/_sources/_autosummary/IQM_Vis.metrics.NLPD_torch.pyramids.rst.txt
@@ -1,4 +1,4 @@
-IQM\_Vis.metrics.NLPD\_torch.pyramids
+IQM\_Vis.metrics.NLPD\_torch.pyramids
 =====================================
 
 .. automodule:: IQM_Vis.metrics.NLPD_torch.pyramids

diff --git a/_sources/_autosummary/IQM_Vis.metrics.NLPD_torch.rst.txt b/_sources/_autosummary/IQM_Vis.metrics.NLPD_torch.rst.txt
@@ -1,4 +1,4 @@
-IQM\_Vis.metrics.NLPD\_torch
+IQM\_Vis.metrics.NLPD\_torch
 ============================
 
 .. automodule:: IQM_Vis.metrics.NLPD_torch
@@ -27,7 +27,6 @@ IQM\_Vis.metrics.NLPD\_torch
    :toctree:
    :recursive:
 
-   IQM_Vis.metrics.NLPD_torch.layers
    IQM_Vis.metrics.NLPD_torch.pyramids
    IQM_Vis.metrics.NLPD_torch.utils
 
diff --git a/_sources/_autosummary/IQM_Vis.metrics.NLPD_torch.utils.rst.txt b/_sources/_autosummary/IQM_Vis.metrics.NLPD_torch.utils.rst.txt
@@ -1,4 +1,4 @@
-IQM\_Vis.metrics.NLPD\_torch.utils
+IQM\_Vis.metrics.NLPD\_torch.utils
 ==================================
 
 .. automodule:: IQM_Vis.metrics.NLPD_torch.utils

diff --git a/...-running_a_2AFC_experiment copy.ipynb.txt → ...ial_4-running_a_2AFC_experiment.ipynb.txt b/...-running_a_2AFC_experiment copy.ipynb.txt → ...ial_4-running_a_2AFC_experiment.ipynb.txt
diff --git a/genindex.html b/genindex.html
@@ -675,13 +675,6 @@ <h2 id="I">I</h2>
 
       <ul>
         <li><a href="_autosummary/IQM_Vis.metrics.NLPD_torch.html#module-IQM_Vis.metrics.NLPD_torch">module</a>
-</li>
-      </ul></li>
-      <li>
-    IQM_Vis.metrics.NLPD_torch.layers
-
-      <ul>
-        <li><a href="_autosummary/IQM_Vis.metrics.NLPD_torch.layers.html#module-IQM_Vis.metrics.NLPD_torch.layers">module</a>
 </li>
       </ul></li>
       <li>
@@ -1018,8 +1011,6 @@ <h2 id="M">M</h2>
         <li><a href="IQM_Vis.metrics.html#module-IQM_Vis.metrics.metric_utils">IQM_Vis.metrics.metric_utils</a>, <a href="_autosummary/IQM_Vis.metrics.metric_utils.html#module-IQM_Vis.metrics.metric_utils">[1]</a>
 </li>
         <li><a href="_autosummary/IQM_Vis.metrics.NLPD_torch.html#module-IQM_Vis.metrics.NLPD_torch">IQM_Vis.metrics.NLPD_torch</a>
-</li>
-        <li><a href="_autosummary/IQM_Vis.metrics.NLPD_torch.layers.html#module-IQM_Vis.metrics.NLPD_torch.layers">IQM_Vis.metrics.NLPD_torch.layers</a>
 </li>
         <li><a href="_autosummary/IQM_Vis.metrics.NLPD_torch.pyramids.html#module-IQM_Vis.metrics.NLPD_torch.pyramids">IQM_Vis.metrics.NLPD_torch.pyramids</a>
 </li>

diff --git a/index.html b/index.html
@@ -135,6 +135,8 @@ <h2>Source Code<a class="headerlink" href="#source-code" title="Permalink to thi
 <li class="toctree-l2"><a class="reference internal" href="notebooks/Tutorial_1-making_the_UI.html">Tutorial 1: Making the UI</a></li>
 <li class="toctree-l2"><a class="reference internal" href="notebooks/Tutorial_2-Customisation.html">Tutorial 2: Simple Customisation</a></li>
 <li class="toctree-l2"><a class="reference internal" href="notebooks/Tutorial_3-Advanced-Customisations.html">Tutorial 3: Customisation Details</a></li>
+<li class="toctree-l2"><a class="reference internal" href="notebooks/Tutorial_4-running_a_2AFC_experiment.html">Tutorial 4: Running a 2AFC Experiment</a></li>
+<li class="toctree-l2"><a class="reference internal" href="notebooks/Tutorial_4-running_a_2AFC_experiment.html#Visualising-the-experiment-results">Visualising the experiment results</a></li>
 </ul>
 </li>
 </ul>

diff --git a/notebooks/Tutorial_1-making_the_UI.html b/notebooks/Tutorial_1-making_the_UI.html
@@ -75,6 +75,8 @@
 </li>
 <li class="toctree-l2"><a class="reference internal" href="Tutorial_2-Customisation.html">Tutorial 2: Simple Customisation</a></li>
 <li class="toctree-l2"><a class="reference internal" href="Tutorial_3-Advanced-Customisations.html">Tutorial 3: Customisation Details</a></li>
+<li class="toctree-l2"><a class="reference internal" href="Tutorial_4-running_a_2AFC_experiment.html">Tutorial 4: Running a 2AFC Experiment</a></li>
+<li class="toctree-l2"><a class="reference internal" href="Tutorial_4-running_a_2AFC_experiment.html#Visualising-the-experiment-results">Visualising the experiment results</a></li>
 </ul>
 </li>
 </ul>

diff --git a/notebooks/Tutorial_2-Customisation.html b/notebooks/Tutorial_2-Customisation.html
@@ -70,6 +70,8 @@
 </ul>
 </li>
 <li class="toctree-l2"><a class="reference internal" href="Tutorial_3-Advanced-Customisations.html">Tutorial 3: Customisation Details</a></li>
+<li class="toctree-l2"><a class="reference internal" href="Tutorial_4-running_a_2AFC_experiment.html">Tutorial 4: Running a 2AFC Experiment</a></li>
+<li class="toctree-l2"><a class="reference internal" href="Tutorial_4-running_a_2AFC_experiment.html#Visualising-the-experiment-results">Visualising the experiment results</a></li>
 </ul>
 </li>
 </ul>

diff --git a/notebooks/Tutorial_3-Advanced-Customisations.html b/notebooks/Tutorial_3-Advanced-Customisations.html
@@ -24,7 +24,7 @@
     <link rel="author" title="About these documents" href="../about.html" />
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
-    <link rel="next" title="IQM_Vis.transforms package" href="../IQM_Vis.transforms.html" />
+    <link rel="next" title="Tutorial 4: Running a 2AFC Experiment" href="Tutorial_4-running_a_2AFC_experiment.html" />
     <link rel="prev" title="Tutorial 2: Simple Customisation" href="Tutorial_2-Customisation.html" /> 
 </head>
 
@@ -66,6 +66,8 @@
 <li class="toctree-l3"><a class="reference internal" href="#Making-the-UI">Making the UI</a></li>
 </ul>
 </li>
+<li class="toctree-l2"><a class="reference internal" href="Tutorial_4-running_a_2AFC_experiment.html">Tutorial 4: Running a 2AFC Experiment</a></li>
+<li class="toctree-l2"><a class="reference internal" href="Tutorial_4-running_a_2AFC_experiment.html#Visualising-the-experiment-results">Visualising the experiment results</a></li>
 </ul>
 </li>
 </ul>
@@ -229,7 +231,7 @@ <h2>Making the UI<a class="headerlink" href="#Making-the-UI" title="Permalink to
           </div>
           <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
         <a href="Tutorial_2-Customisation.html" class="btn btn-neutral float-left" title="Tutorial 2: Simple Customisation" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
-        <a href="../IQM_Vis.transforms.html" class="btn btn-neutral float-right" title="IQM_Vis.transforms package" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+        <a href="Tutorial_4-running_a_2AFC_experiment.html" class="btn btn-neutral float-right" title="Tutorial 4: Running a 2AFC Experiment" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
     </div>
 
   <hr/>

diff --git a/...ial_4-running_a_2AFC_experiment copy.html → ...Tutorial_4-running_a_2AFC_experiment.html b/...ial_4-running_a_2AFC_experiment copy.html → ...Tutorial_4-running_a_2AFC_experiment.html
@@ -22,7 +22,9 @@
     <script src="../_static/js/theme.js"></script>
     <link rel="author" title="About these documents" href="../about.html" />
     <link rel="index" title="Index" href="../genindex.html" />
-    <link rel="search" title="Search" href="../search.html" /> 
+    <link rel="search" title="Search" href="../search.html" />
+    <link rel="next" title="IQM_Vis.transforms package" href="../IQM_Vis.transforms.html" />
+    <link rel="prev" title="Tutorial 3: Customisation Details" href="Tutorial_3-Advanced-Customisations.html" /> 
 </head>
 
 <body class="wy-body-for-nav"> 
@@ -53,8 +55,23 @@
 <li class="toctree-l1"><a class="reference internal" href="../getting_started.html">Getting Started</a></li>
 </ul>
 <p class="caption" role="heading"><span class="caption-text">Tutorials:</span></p>
-<ul>
-<li class="toctree-l1"><a class="reference internal" href="../Tutorials.html">Tutorials</a></li>
+<ul class="current">
+<li class="toctree-l1 current"><a class="reference internal" href="../Tutorials.html">Tutorials</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="Tutorial_1-making_the_UI.html">Tutorial 1: Making the UI</a></li>
+<li class="toctree-l2"><a class="reference internal" href="Tutorial_2-Customisation.html">Tutorial 2: Simple Customisation</a></li>
+<li class="toctree-l2"><a class="reference internal" href="Tutorial_3-Advanced-Customisations.html">Tutorial 3: Customisation Details</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">Tutorial 4: Running a 2AFC Experiment</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="#Experiment-Screen">Experiment Screen</a><ul>
+<li class="toctree-l4"><a class="reference internal" href="#Experiment-Info">Experiment Info</a></li>
+<li class="toctree-l4"><a class="reference internal" href="#Experiment-Running">Experiment Running</a></li>
+<li class="toctree-l4"><a class="reference internal" href="#Experiment-Finished">Experiment Finished</a></li>
+</ul>
+</li>
+</ul>
+</li>
+<li class="toctree-l2"><a class="reference internal" href="#Visualising-the-experiment-results">Visualising the experiment results</a></li>
+</ul>
+</li>
 </ul>
 <p class="caption" role="heading"><span class="caption-text">Documentation:</span></p>
 <ul>
@@ -76,17 +93,18 @@
           <div role="navigation" aria-label="Page navigation">
   <ul class="wy-breadcrumbs">
       <li><a href="../index.html" class="icon icon-home"></a></li>
+          <li class="breadcrumb-item"><a href="../Tutorials.html">Tutorials</a></li>
       <li class="breadcrumb-item active">Tutorial 4: Running a 2AFC Experiment</li>
       <li class="wy-breadcrumbs-aside">
-            <a href="../_sources/notebooks/Tutorial_4-running_a_2AFC_experiment copy.ipynb.txt" rel="nofollow"> View page source</a>
+            <a href="../_sources/notebooks/Tutorial_4-running_a_2AFC_experiment.ipynb.txt" rel="nofollow"> View page source</a>
       </li>
   </ul>
   <hr/>
 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
            <div itemprop="articleBody">
 
-  <p>View the whole notebook: <a class="reference external" href="https://github.com/mattclifford1/IQM-Vis/tree/main/dev_resources/docs/notebooks/Tutorial_4-running_a_2AFC_experiment">https://github.com/mattclifford1/IQM-Vis/tree/main/dev_resources/docs/notebooks/Tutorial_4-running_a_2AFC_experiment</a> copy.ipynb</p>
+  <p>View the whole notebook: <a class="reference external" href="https://github.com/mattclifford1/IQM-Vis/tree/main/dev_resources/docs/notebooks/Tutorial_4-running_a_2AFC_experiment.ipynb">https://github.com/mattclifford1/IQM-Vis/tree/main/dev_resources/docs/notebooks/Tutorial_4-running_a_2AFC_experiment.ipynb</a></p>
 <hr class="docutils" />
 <section id="Tutorial-4:-Running-a-2AFC-Experiment">
 <h1>Tutorial 4: Running a 2AFC Experiment<a class="headerlink" href="#Tutorial-4:-Running-a-2AFC-Experiment" title="Permalink to this headline"></a></h1>
@@ -139,7 +157,10 @@ <h1>Visualising the experiment results<a class="headerlink" href="#Visualising-t
 
            </div>
           </div>
-          <footer>
+          <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+        <a href="Tutorial_3-Advanced-Customisations.html" class="btn btn-neutral float-left" title="Tutorial 3: Customisation Details" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+        <a href="../IQM_Vis.transforms.html" class="btn btn-neutral float-right" title="IQM_Vis.transforms package" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+    </div>
 
   <hr/>
 

diff --git a/...al_4-running_a_2AFC_experiment copy.ipynb → ...utorial_4-running_a_2AFC_experiment.ipynb b/...al_4-running_a_2AFC_experiment copy.ipynb → ...utorial_4-running_a_2AFC_experiment.ipynb
diff --git a/objects.inv b/objects.inv
diff --git a/py-modindex.html b/py-modindex.html
@@ -167,11 +167,6 @@ <h1>Python Module Index</h1>
        <td>&#160;&#160;&#160;
        <a href="_autosummary/IQM_Vis.metrics.NLPD_torch.html#module-IQM_Vis.metrics.NLPD_torch"><code class="xref">IQM_Vis.metrics.NLPD_torch</code></a></td><td>
        <em></em></td></tr>
-     <tr class="cg-1">
-       <td></td>
-       <td>&#160;&#160;&#160;
-       <a href="_autosummary/IQM_Vis.metrics.NLPD_torch.layers.html#module-IQM_Vis.metrics.NLPD_torch.layers"><code class="xref">IQM_Vis.metrics.NLPD_torch.layers</code></a></td><td>
-       <em></em></td></tr>
      <tr class="cg-1">
        <td></td>
        <td>&#160;&#160;&#160;

diff --git a/searchindex.js b/searchindex.js
-Original file line number
+Diff line change
@@ Expand Up / @@ -70,6 +70,8 @@ @@
     </ul>
     </li>
     <li class="toctree-l2"><a class="reference internal" href="Tutorial_3-Advanced-Customisations.html">Tutorial 3: Customisation Details</a></li>
+    <li class="toctree-l2"><a class="reference internal" href="Tutorial_4-running_a_2AFC_experiment.html">Tutorial 4: Running a 2AFC Experiment</a></li>
+    <li class="toctree-l2"><a class="reference internal" href="Tutorial_4-running_a_2AFC_experiment.html#Visualising-the-experiment-results">Visualising the experiment results</a></li>
     </ul>
     </li>
     </ul>
@@ Expand Down @@