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74 Open 655 Closed
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Issues list

Feature request: control info-file column separator
#816 opened Nov 6, 2024 by ramongallego
3
I have 5' and 3' adapter sequences for the paired read sequencing data? how should I remove them
#813 opened Oct 14, 2024 by sayeraselvan
14
Trimming reads generated by the template switching RT
#810 opened Sep 24, 2024 by Ahram-Ahn
1
[Question] linked adapters from Fasta file and discarding untrimmed pairs
#806 opened Sep 6, 2024 by marchoeppner
1
Suggestion: filter mode for polyA
#805 opened Aug 29, 2024 by NickNCL
2
Unable to trim primers from my interleaved fastq files
#800 opened Aug 16, 2024 by kdbchau
4
Should I use -a or -g when demultiplexing ONT reads with dual barcodes?
#799 opened Aug 9, 2024 by ashleyp1
3
Primer sequence trimming. Cutadapt does not cut all of them
#798 opened Aug 8, 2024 by Guillermouceda
1
Heterogeneity Spacers and Primers
#792 opened Jul 2, 2024 by luigallucci
5
Adapter matches in the middle of a read masked with N
#787 opened May 21, 2024 by hmutpw
2
cutadapt: error: cutadapt not able to trim the desired adapto
#785 opened May 11, 2024 by faizee-ali
3
"OverflowError: FASTA/FASTQ record does not fit into buffer" when trimming ONT reads
#783 opened May 1, 2024 by diego-rt
7
Remove the "Incomplete adapter sequence" warning
#780 opened Apr 23, 2024 by marcelm
Ensuring to find the correct file after Demultiplexing my 16S amplicon raw dataset with combinatorial dual indexes cutadapt command
#776 opened Apr 16, 2024 by JayalalKJ
5
Feature request: Support for multiple FastQ pairs
#775 opened Mar 27, 2024 by Redmar-van-den-Berg
Vectorize alignment algorithm for x86-64
#768 opened Mar 15, 2024 by rhpvorderman
1
Output of demultiplexing mixed oriented reads
#764 opened Mar 1, 2024 by luigallucci
5
When demultiplexing, report contains irrelevant line
#760 opened Feb 2, 2024 by marcelm
feature request: ubam support?
#757 opened Jan 25, 2024 by eboyden
5
sc/snATAC-seq barcode correction
#754 opened Jan 10, 2024 by sknaack
5
poly-A trimming for paired-end data - consider orientation
#753 opened Jan 5, 2024 by benemead
2
Question about the paired-end read trimming.
#751 opened Jan 3, 2024 by chaibenl
1
Feature request: ONT Chimeric read splitting
#747 opened Dec 12, 2023 by rhpvorderman
4
Small ONT optimization: length filtering before applying trimming
#743 opened Nov 29, 2023 by rhpvorderman
1
Write a user guide specifically for ONT data
#742 opened Nov 29, 2023 by rhpvorderman
18
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