Changes in the cookiecutter toml file (#383)

* Changes the cookiecutter toml file * updated git * update based on cookiecutter * removed rej files * cleaned up workflow
mapping-commons · Jun 21, 2023 · a983827 · a983827
1 parent 515624a
commit a983827
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Showing 6 changed files with 12 additions and 22 deletions.
diff --git a/.cruft.json b/.cruft.json
@@ -1,12 +1,12 @@
 {
   "template": "https://github.com/monarch-initiative/monarch-project-template.git",
-  "commit": "7a5148b11fd6f4f70da7ef921789e0d5fe720e01",
+  "commit": "4a7682b439c90d913390d1ca7d930a88055a22d3",
   "checkout": null,
   "context": {
     "cookiecutter": {
       "project_name": "sssom-py",
       "github_org_name": "mapping-commons",
-      "__project_slug": "sssom",
+      "__project_slug": "sssom_py",
       "project_description": "SSSOM (Simple Standard for Sharing Ontology Mappings) is a TSV and RDF/OWL standard for ontology mappings.",
       "min_python_version": "3.7",
       "file_name": "main",

diff --git a/.github/workflows/deploy-docs.yml b/.github/workflows/deploy-docs.yml
@@ -21,7 +21,7 @@ jobs:
 
     - name: Install dependencies.
       run: |
-        poetry install --extras docs
+        poetry install --with docs
         
     - name: Build documentation.
       run: |

diff --git a/.github/workflows/qc.yml b/.github/workflows/qc.yml
@@ -28,9 +28,7 @@ jobs:
           pip install poetry==1.3.2
 
       - name: Install dependencies
-        run: |
-          poetry install --extras tests
-          poetry add tox 
+        run: poetry install
 
       - name: Check code quality with flake8
         run: poetry run tox -e flake8

diff --git a/.gitignore b/.gitignore
@@ -156,4 +156,5 @@ schema/sssom.schema.json
 schema/sssom.yaml
 schema/sssom_datamodel.py
 sssom/internal_context.py
-sssom/sssom_datamodel.py
+sssom/sssom_datamodel.py
+*.rej
diff --git a/poetry.lock b/poetry.lock
diff --git a/pyproject.toml b/pyproject.toml
@@ -31,6 +31,11 @@ scipy = "^1.10.1"
 [tool.poetry.group.dev.dependencies]
 pytest = {version = ">=7.1.2"}
 tox = {version = ">=3.25.1"}
+
+[tool.poetry.group.docs]
+optional = true
+
+[tool.poetry.group.docs.dependencies]
 sphinx = {version = ">=6.1.3"}
 sphinx-rtd-theme = {version = ">=1.0.0"}
 sphinx-autodoc-typehints = {version = ">=1.2.0"}
@@ -40,16 +45,6 @@ myst-parser = {version = ">=0.18.1"}
 [tool.poetry.scripts]
 sssom = "sssom.cli:main"
 
-[tool.poetry.extras]
-docs = [
-    "sphinx",
-    "sphinx-rtd-theme",
-    "sphinx-autodoc-typehints",
-    "sphinx-click",
-    "myst-parser",
-    ]
-tests = ["pytest", "tox"]
-
 [tool.poetry-dynamic-versioning]
 enable = false
 vcs = "git"