v3.5.5

• Add utility script NonpareilCurves.R

v3.5.4

Solve overflow issues affecting conda builds

v3.5.3

• Several bug fixes
• Fully reproducible results (with -r)
• Improvements in RAM handling
• Improvements in CLI defaults
• Safer random subsampling when -T kmer

Full Changelog: v3.5.2...v3.5.3

v3.5.2

Safe gunzipping

v3.5.1

Cleaner compilation and harmonized version numbers

Full Changelog: v3.5.0...v3.5.1

v3.5.0

Support for gzipped sequence files

v3.4.1

Adds informative error message on missing input file

v3.4.0

Implements random seeds for alignment kernel and expands documentation

v3.3.4

Solved an infinite loop for low-quality sequences

v3.3.3

Solved a minor issue with @ksize headers for alignment kernel