Merge pull request #13 from lldelisle/update_omero_hyperstack_to_gast…

…ruloid_measurements update omero_hyperstack_to_gastruloid_measurement
lldelisle · Dec 20, 2023 · aec2e2e · aec2e2e
2 parents 4ac9b1d + 24dea9d
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diff --git a/.tt_skip b/.tt_skip
@@ -1,6 +1,4 @@
 tools/measure_gastruloids
-tools/incucyte_stack_and_upload_omero/
 tools/hyperstack_to_bleach_corrected_movie
 tools/omero_hyperstack_to_fluo_measurements_on_gastruloid
-tools/omero_hyperstack_to_gastruloid_measurements
 tools/omero_clean_rois_tables
diff --git a/tools/omero_hyperstack_to_gastruloid_measurements/.shed.yml b/tools/omero_hyperstack_to_gastruloid_measurements/.shed.yml
@@ -3,5 +3,5 @@ categories:
 description: Analyse Hyperstack on OMERO server to segment gastruloid and compute measurements
 name: omero_hyperstack_to_gastruloid_measurements
 owner: lldelisle
-long_description: Uses a groovy to get images from OMERO, use an ilastik project to get propability and generate a mask. The potential gastruloids will be indentified by analyze Particles. On each ROI, the elongation index will be computed.
+long_description: Uses a groovy to get images from OMERO, use an ilastik project to get propability and generate a mask or simply autothreshold to mask. The potential gastruloids will be indentified by analyze Particles. On each ROI, the elongation index will be computed.
 remote_repository_url: https://github.com/lldelisle/tools-lldelisle/tree/master/tools/omero_hyperstack_to_gastruloid_measurements