Skip to content

Commit

Permalink
corrected bug when installing rtracklayer
Browse files Browse the repository at this point in the history
  • Loading branch information
lldelisle committed Apr 30, 2020
1 parent df04aa8 commit ff034cc
Showing 1 changed file with 1 addition and 5 deletions.
6 changes: 1 addition & 5 deletions step2-DESeq2.R
Original file line number Diff line number Diff line change
Expand Up @@ -157,11 +157,7 @@ if(exists("tableWithAnnotations")){

if(exists("gtfFile")){
if(file.exists(gtfFile)){
if(!"rtracklayer"%in%installed.packages()){
source("https://bioconductor.org/biocLite.R")
biocLite("rtracklayer")
}
library(rtracklayer)
safelyLoadAPackageInCRANorBioconductor("rtracklayer")
cat("Reading gtf file...")
gtf<-readGFF(gtfFile)
cat("Done\n")
Expand Down

0 comments on commit ff034cc

Please sign in to comment.