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Update dependency io.swagger:swagger-codegen-maven-plugin to v2.4.44 #77

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Update dependency io.swagger:swagger-codegen-maven-plugin to v2.4.44

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Update dependency io.swagger:swagger-codegen-maven-plugin to v2.4.44 #77

Update dependency io.swagger:swagger-codegen-maven-plugin to v2.4.44
ead6d1f
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GitHub Actions / Test Results failed Dec 18, 2024 in 0s

14 fail, 232 pass in 17s

246 tests  ±0   232 ✅ ±0   17s ⏱️ -1s
 56 suites ±0     0 💤 ±0 
 56 files   ±0    14 ❌ ±0 

Results for commit ead6d1f. ± Comparison against earlier commit 8b74827.

Annotations

Check warning on line 0 in org.lifstools.mztab2.io.MZTabFileParserTest

See this annotation in the file changed.

@github-actions github-actions / Test Results

testExamples[1: semantic validation of {0} on level {1} expecting {2} structural/logical errors and MzTab to be null: {3}] (org.lifstools.mztab2.io.MZTabFileParserTest) failed 

io/target/surefire-reports/TEST-org.lifstools.mztab2.io.MZTabFileParserTest.xml [took 1s]
Raw output 
[Error-2008] line -1: "assay[1] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[2] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[3] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[4] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[5] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[6] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[7] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[8] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[9] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[10] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[11] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[12] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[13] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[14] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[15] <name>" MUST be defined in the metadata section.
java.lang.AssertionError: 
[Error-2008] line -1: "assay[1]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[2]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[3]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[4]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[5]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[6]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[7]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[8]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[9]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[10]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[11]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[12]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[13]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[14]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[15]	<name>" MUST be defined in the metadata section.


	at org.junit.Assert.fail(Assert.java:89)
	at org.lifstools.mztab2.io.TestResources.parseResource(TestResources.java:55)
	at org.lifstools.mztab2.io.MZTabFileParserTest.testExample(MZTabFileParserTest.java:135)
	at org.lifstools.mztab2.io.MZTabFileParserTest.testExamples(MZTabFileParserTest.java:125)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
	at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.base/java.lang.reflect.Method.invoke(Method.java:569)
	at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:59)
	at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
	at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:56)
	at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17)
	at org.junit.rules.TestWatcher$1.evaluate(TestWatcher.java:61)
	at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
	at org.junit.runners.BlockJUnit4ClassRunner$1.evaluate(BlockJUnit4ClassRunner.java:100)
	at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:366)
	at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:103)
	at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:63)
	at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
	at org.apache.maven.surefire.junitcore.pc.Scheduler$1.run(Scheduler.java:398)
	at org.apache.maven.surefire.junitcore.pc.InvokerStrategy.schedule(InvokerStrategy.java:54)
	at org.apache.maven.surefire.junitcore.pc.Scheduler.schedule(Scheduler.java:355)
	at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329)
	at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66)
	at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293)
	at org.junit.runners.ParentRunner.run(ParentRunner.java:413)
	at org.junit.runners.Suite.runChild(Suite.java:128)
	at org.junit.runners.Suite.runChild(Suite.java:27)
	at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
	at org.apache.maven.surefire.junitcore.pc.Scheduler$1.run(Scheduler.java:398)
	at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:539)
	at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
	at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1136)
	at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635)
	at java.base/java.lang.Thread.run(Thread.java:840)
################################################################################
# testExamples[1: semantic validation of {0} on level {1} expecting {2} structural/logical errors and MzTab to be null: {3}]
################################################################################
Testing example: MouseLiver_negative.mzTab
[Error-2008] line -1: "assay[1]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[2]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[3]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[4]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[5]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[6]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[7]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[8]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[9]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[10]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[11]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[12]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[13]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[14]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[15]	<name>" MUST be defined in the metadata section.

Check warning on line 0 in org.lifstools.mztab2.io.MZTabFileParserTest

See this annotation in the file changed.

@github-actions github-actions / Test Results

testExamples[6: semantic validation of {0} on level {1} expecting {2} structural/logical errors and MzTab to be null: {3}] (org.lifstools.mztab2.io.MZTabFileParserTest) failed 

io/target/surefire-reports/TEST-org.lifstools.mztab2.io.MZTabFileParserTest.xml [took 0s]
Raw output 
[Error-2008] line -1: "assay[1] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[2] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[3] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[4] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[5] <name>" MUST be defined in the metadata section.
java.lang.AssertionError: 
[Error-2008] line -1: "assay[1]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[2]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[3]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[4]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[5]	<name>" MUST be defined in the metadata section.


	at org.junit.Assert.fail(Assert.java:89)
	at org.lifstools.mztab2.io.TestResources.parseResource(TestResources.java:55)
	at org.lifstools.mztab2.io.MZTabFileParserTest.testExample(MZTabFileParserTest.java:135)
	at org.lifstools.mztab2.io.MZTabFileParserTest.testExamples(MZTabFileParserTest.java:125)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
	at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.base/java.lang.reflect.Method.invoke(Method.java:569)
	at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:59)
	at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
	at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:56)
	at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17)
	at org.junit.rules.TestWatcher$1.evaluate(TestWatcher.java:61)
	at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
	at org.junit.runners.BlockJUnit4ClassRunner$1.evaluate(BlockJUnit4ClassRunner.java:100)
	at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:366)
	at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:103)
	at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:63)
	at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
	at org.apache.maven.surefire.junitcore.pc.Scheduler$1.run(Scheduler.java:398)
	at org.apache.maven.surefire.junitcore.pc.InvokerStrategy.schedule(InvokerStrategy.java:54)
	at org.apache.maven.surefire.junitcore.pc.Scheduler.schedule(Scheduler.java:355)
	at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329)
	at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66)
	at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293)
	at org.junit.runners.ParentRunner.run(ParentRunner.java:413)
	at org.junit.runners.Suite.runChild(Suite.java:128)
	at org.junit.runners.Suite.runChild(Suite.java:27)
	at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
	at org.apache.maven.surefire.junitcore.pc.Scheduler$1.run(Scheduler.java:398)
	at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:539)
	at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
	at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1136)
	at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635)
	at java.base/java.lang.Thread.run(Thread.java:840)
################################################################################
# testExamples[6: semantic validation of {0} on level {1} expecting {2} structural/logical errors and MzTab to be null: {3}]
################################################################################
Testing example: StandardMix_positive_exportSpeciesLevel.mzTab
[Error-2008] line -1: "assay[1]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[2]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[3]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[4]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[5]	<name>" MUST be defined in the metadata section.

Check warning on line 0 in org.lifstools.mztab2.io.MZTabFileParserTest

See this annotation in the file changed.

@github-actions github-actions / Test Results

testExamples[2: semantic validation of {0} on level {1} expecting {2} structural/logical errors and MzTab to be null: {3}] (org.lifstools.mztab2.io.MZTabFileParserTest) failed 

io/target/surefire-reports/TEST-org.lifstools.mztab2.io.MZTabFileParserTest.xml [took 1s]
Raw output 
[Error-2008] line -1: "assay[1] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[2] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[3] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[4] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[5] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[6] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[7] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[8] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[9] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[10] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[11] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[12] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[13] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[14] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[15] <name>" MUST be defined in the metadata section.
java.lang.AssertionError: 
[Error-2008] line -1: "assay[1]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[2]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[3]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[4]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[5]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[6]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[7]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[8]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[9]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[10]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[11]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[12]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[13]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[14]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[15]	<name>" MUST be defined in the metadata section.


	at org.junit.Assert.fail(Assert.java:89)
	at org.lifstools.mztab2.io.TestResources.parseResource(TestResources.java:55)
	at org.lifstools.mztab2.io.MZTabFileParserTest.testExample(MZTabFileParserTest.java:135)
	at org.lifstools.mztab2.io.MZTabFileParserTest.testExamples(MZTabFileParserTest.java:125)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
	at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.base/java.lang.reflect.Method.invoke(Method.java:569)
	at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:59)
	at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
	at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:56)
	at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17)
	at org.junit.rules.TestWatcher$1.evaluate(TestWatcher.java:61)
	at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
	at org.junit.runners.BlockJUnit4ClassRunner$1.evaluate(BlockJUnit4ClassRunner.java:100)
	at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:366)
	at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:103)
	at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:63)
	at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
	at org.apache.maven.surefire.junitcore.pc.Scheduler$1.run(Scheduler.java:398)
	at org.apache.maven.surefire.junitcore.pc.InvokerStrategy.schedule(InvokerStrategy.java:54)
	at org.apache.maven.surefire.junitcore.pc.Scheduler.schedule(Scheduler.java:355)
	at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329)
	at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66)
	at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293)
	at org.junit.runners.ParentRunner.run(ParentRunner.java:413)
	at org.junit.runners.Suite.runChild(Suite.java:128)
	at org.junit.runners.Suite.runChild(Suite.java:27)
	at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
	at org.apache.maven.surefire.junitcore.pc.Scheduler$1.run(Scheduler.java:398)
	at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:539)
	at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
	at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1136)
	at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635)
	at java.base/java.lang.Thread.run(Thread.java:840)
################################################################################
# testExamples[2: semantic validation of {0} on level {1} expecting {2} structural/logical errors and MzTab to be null: {3}]
################################################################################
Testing example: MouseLiver_negative_mztab_null-colunit.txt
[Error-2008] line -1: "assay[1]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[2]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[3]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[4]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[5]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[6]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[7]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[8]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[9]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[10]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[11]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[12]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[13]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[14]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[15]	<name>" MUST be defined in the metadata section.

Check warning on line 0 in org.lifstools.mztab2.io.MZTabFileParserTest

See this annotation in the file changed.

@github-actions github-actions / Test Results

testExamples[4: semantic validation of {0} on level {1} expecting {2} structural/logical errors and MzTab to be null: {3}] (org.lifstools.mztab2.io.MZTabFileParserTest) failed 

io/target/surefire-reports/TEST-org.lifstools.mztab2.io.MZTabFileParserTest.xml [took 0s]
Raw output 
[Error-2008] line -1: "assay[1] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[2] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[3] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[4] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[5] <name>" MUST be defined in the metadata section.
java.lang.AssertionError: 
[Error-2008] line -1: "assay[1]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[2]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[3]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[4]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[5]	<name>" MUST be defined in the metadata section.


	at org.junit.Assert.fail(Assert.java:89)
	at org.lifstools.mztab2.io.TestResources.parseResource(TestResources.java:55)
	at org.lifstools.mztab2.io.MZTabFileParserTest.testExample(MZTabFileParserTest.java:135)
	at org.lifstools.mztab2.io.MZTabFileParserTest.testExamples(MZTabFileParserTest.java:125)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
	at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.base/java.lang.reflect.Method.invoke(Method.java:569)
	at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:59)
	at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
	at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:56)
	at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17)
	at org.junit.rules.TestWatcher$1.evaluate(TestWatcher.java:61)
	at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
	at org.junit.runners.BlockJUnit4ClassRunner$1.evaluate(BlockJUnit4ClassRunner.java:100)
	at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:366)
	at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:103)
	at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:63)
	at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
	at org.apache.maven.surefire.junitcore.pc.Scheduler$1.run(Scheduler.java:398)
	at org.apache.maven.surefire.junitcore.pc.InvokerStrategy.schedule(InvokerStrategy.java:54)
	at org.apache.maven.surefire.junitcore.pc.Scheduler.schedule(Scheduler.java:355)
	at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329)
	at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66)
	at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293)
	at org.junit.runners.ParentRunner.run(ParentRunner.java:413)
	at org.junit.runners.Suite.runChild(Suite.java:128)
	at org.junit.runners.Suite.runChild(Suite.java:27)
	at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
	at org.apache.maven.surefire.junitcore.pc.Scheduler$1.run(Scheduler.java:398)
	at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:539)
	at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
	at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1136)
	at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635)
	at java.base/java.lang.Thread.run(Thread.java:840)
################################################################################
# testExamples[4: semantic validation of {0} on level {1} expecting {2} structural/logical errors and MzTab to be null: {3}]
################################################################################
Testing example: StandardMix_negative_exportSpeciesLevel.mzTab
[Error-2008] line -1: "assay[1]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[2]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[3]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[4]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[5]	<name>" MUST be defined in the metadata section.

Check warning on line 0 in org.lifstools.mztab2.io.MZTabFileParserTest

See this annotation in the file changed.

@github-actions github-actions / Test Results

testExamples[3: semantic validation of {0} on level {1} expecting {2} structural/logical errors and MzTab to be null: {3}] (org.lifstools.mztab2.io.MZTabFileParserTest) failed 

io/target/surefire-reports/TEST-org.lifstools.mztab2.io.MZTabFileParserTest.xml [took 0s]
Raw output 
[Error-2008] line -1: "assay[1] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[2] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[3] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[4] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[5] <name>" MUST be defined in the metadata section.
java.lang.AssertionError: 
[Error-2008] line -1: "assay[1]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[2]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[3]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[4]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[5]	<name>" MUST be defined in the metadata section.


	at org.junit.Assert.fail(Assert.java:89)
	at org.lifstools.mztab2.io.TestResources.parseResource(TestResources.java:55)
	at org.lifstools.mztab2.io.MZTabFileParserTest.testExample(MZTabFileParserTest.java:135)
	at org.lifstools.mztab2.io.MZTabFileParserTest.testExamples(MZTabFileParserTest.java:125)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
	at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.base/java.lang.reflect.Method.invoke(Method.java:569)
	at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:59)
	at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
	at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:56)
	at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17)
	at org.junit.rules.TestWatcher$1.evaluate(TestWatcher.java:61)
	at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
	at org.junit.runners.BlockJUnit4ClassRunner$1.evaluate(BlockJUnit4ClassRunner.java:100)
	at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:366)
	at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:103)
	at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:63)
	at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
	at org.apache.maven.surefire.junitcore.pc.Scheduler$1.run(Scheduler.java:398)
	at org.apache.maven.surefire.junitcore.pc.InvokerStrategy.schedule(InvokerStrategy.java:54)
	at org.apache.maven.surefire.junitcore.pc.Scheduler.schedule(Scheduler.java:355)
	at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329)
	at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66)
	at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293)
	at org.junit.runners.ParentRunner.run(ParentRunner.java:413)
	at org.junit.runners.Suite.runChild(Suite.java:128)
	at org.junit.runners.Suite.runChild(Suite.java:27)
	at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
	at org.apache.maven.surefire.junitcore.pc.Scheduler$1.run(Scheduler.java:398)
	at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:539)
	at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
	at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1136)
	at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635)
	at java.base/java.lang.Thread.run(Thread.java:840)
################################################################################
# testExamples[3: semantic validation of {0} on level {1} expecting {2} structural/logical errors and MzTab to be null: {3}]
################################################################################
Testing example: StandardMix_negative_exportPositionLevel.mzTab
[Error-2008] line -1: "assay[1]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[2]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[3]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[4]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[5]	<name>" MUST be defined in the metadata section.

Check warning on line 0 in org.lifstools.mztab2.io.MZTabFileParserTest

See this annotation in the file changed.

@github-actions github-actions / Test Results

testExamples[5: semantic validation of {0} on level {1} expecting {2} structural/logical errors and MzTab to be null: {3}] (org.lifstools.mztab2.io.MZTabFileParserTest) failed 

io/target/surefire-reports/TEST-org.lifstools.mztab2.io.MZTabFileParserTest.xml [took 0s]
Raw output 
[Error-2008] line -1: "assay[1] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[2] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[3] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[4] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[5] <name>" MUST be defined in the metadata section.
java.lang.AssertionError: 
[Error-2008] line -1: "assay[1]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[2]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[3]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[4]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[5]	<name>" MUST be defined in the metadata section.


	at org.junit.Assert.fail(Assert.java:89)
	at org.lifstools.mztab2.io.TestResources.parseResource(TestResources.java:55)
	at org.lifstools.mztab2.io.MZTabFileParserTest.testExample(MZTabFileParserTest.java:135)
	at org.lifstools.mztab2.io.MZTabFileParserTest.testExamples(MZTabFileParserTest.java:125)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
	at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.base/java.lang.reflect.Method.invoke(Method.java:569)
	at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:59)
	at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
	at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:56)
	at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17)
	at org.junit.rules.TestWatcher$1.evaluate(TestWatcher.java:61)
	at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
	at org.junit.runners.BlockJUnit4ClassRunner$1.evaluate(BlockJUnit4ClassRunner.java:100)
	at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:366)
	at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:103)
	at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:63)
	at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
	at org.apache.maven.surefire.junitcore.pc.Scheduler$1.run(Scheduler.java:398)
	at org.apache.maven.surefire.junitcore.pc.InvokerStrategy.schedule(InvokerStrategy.java:54)
	at org.apache.maven.surefire.junitcore.pc.Scheduler.schedule(Scheduler.java:355)
	at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329)
	at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66)
	at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293)
	at org.junit.runners.ParentRunner.run(ParentRunner.java:413)
	at org.junit.runners.Suite.runChild(Suite.java:128)
	at org.junit.runners.Suite.runChild(Suite.java:27)
	at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
	at org.apache.maven.surefire.junitcore.pc.Scheduler$1.run(Scheduler.java:398)
	at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:539)
	at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
	at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1136)
	at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635)
	at java.base/java.lang.Thread.run(Thread.java:840)
################################################################################
# testExamples[5: semantic validation of {0} on level {1} expecting {2} structural/logical errors and MzTab to be null: {3}]
################################################################################
Testing example: StandardMix_positive_exportPositionLevel.mzTab
[Error-2008] line -1: "assay[1]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[2]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[3]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[4]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[5]	<name>" MUST be defined in the metadata section.

Check warning on line 0 in org.lifstools.mztab2.io.MZTabFileParserTest

See this annotation in the file changed.

@github-actions github-actions / Test Results

testExamples[9: semantic validation of {0} on level {1} expecting {2} structural/logical errors and MzTab to be null: {3}] (org.lifstools.mztab2.io.MZTabFileParserTest) failed 

io/target/surefire-reports/TEST-org.lifstools.mztab2.io.MZTabFileParserTest.xml [took 0s]
Raw output 
[Error-2008] line -1: "assay[1] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[2] <name>" MUST be defined in the metadata section.
java.lang.AssertionError: 
[Error-2008] line -1: "assay[1]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[2]	<name>" MUST be defined in the metadata section.


	at org.junit.Assert.fail(Assert.java:89)
	at org.lifstools.mztab2.io.TestResources.parseResource(TestResources.java:55)
	at org.lifstools.mztab2.io.MZTabFileParserTest.testExample(MZTabFileParserTest.java:135)
	at org.lifstools.mztab2.io.MZTabFileParserTest.testExamples(MZTabFileParserTest.java:125)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
	at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.base/java.lang.reflect.Method.invoke(Method.java:569)
	at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:59)
	at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
	at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:56)
	at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17)
	at org.junit.rules.TestWatcher$1.evaluate(TestWatcher.java:61)
	at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
	at org.junit.runners.BlockJUnit4ClassRunner$1.evaluate(BlockJUnit4ClassRunner.java:100)
	at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:366)
	at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:103)
	at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:63)
	at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
	at org.apache.maven.surefire.junitcore.pc.Scheduler$1.run(Scheduler.java:398)
	at org.apache.maven.surefire.junitcore.pc.InvokerStrategy.schedule(InvokerStrategy.java:54)
	at org.apache.maven.surefire.junitcore.pc.Scheduler.schedule(Scheduler.java:355)
	at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329)
	at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66)
	at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293)
	at org.junit.runners.ParentRunner.run(ParentRunner.java:413)
	at org.junit.runners.Suite.runChild(Suite.java:128)
	at org.junit.runners.Suite.runChild(Suite.java:27)
	at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
	at org.apache.maven.surefire.junitcore.pc.Scheduler$1.run(Scheduler.java:398)
	at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:539)
	at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
	at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1136)
	at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635)
	at java.base/java.lang.Thread.run(Thread.java:840)
################################################################################
# testExamples[9: semantic validation of {0} on level {1} expecting {2} structural/logical errors and MzTab to be null: {3}]
################################################################################
Testing example: gcxgc-ms-example.mztab
[Error-2008] line -1: "assay[1]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[2]	<name>" MUST be defined in the metadata section.

Check warning on line 0 in org.lifstools.mztab2.io.MZTabFileParserTest

See this annotation in the file changed.

@github-actions github-actions / Test Results

testExamples[10: semantic validation of {0} on level {1} expecting {2} structural/logical errors and MzTab to be null: {3}] (org.lifstools.mztab2.io.MZTabFileParserTest) failed 

io/target/surefire-reports/TEST-org.lifstools.mztab2.io.MZTabFileParserTest.xml [took 0s]
Raw output 
[Error-2008] line -1: "assay[1] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[2] <name>" MUST be defined in the metadata section.
java.lang.AssertionError: 
[Error-2008] line -1: "assay[1]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[2]	<name>" MUST be defined in the metadata section.


	at org.junit.Assert.fail(Assert.java:89)
	at org.lifstools.mztab2.io.TestResources.parseResource(TestResources.java:55)
	at org.lifstools.mztab2.io.MZTabFileParserTest.testExample(MZTabFileParserTest.java:135)
	at org.lifstools.mztab2.io.MZTabFileParserTest.testExamples(MZTabFileParserTest.java:125)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
	at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.base/java.lang.reflect.Method.invoke(Method.java:569)
	at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:59)
	at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
	at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:56)
	at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17)
	at org.junit.rules.TestWatcher$1.evaluate(TestWatcher.java:61)
	at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
	at org.junit.runners.BlockJUnit4ClassRunner$1.evaluate(BlockJUnit4ClassRunner.java:100)
	at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:366)
	at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:103)
	at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:63)
	at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
	at org.apache.maven.surefire.junitcore.pc.Scheduler$1.run(Scheduler.java:398)
	at org.apache.maven.surefire.junitcore.pc.InvokerStrategy.schedule(InvokerStrategy.java:54)
	at org.apache.maven.surefire.junitcore.pc.Scheduler.schedule(Scheduler.java:355)
	at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329)
	at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66)
	at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293)
	at org.junit.runners.ParentRunner.run(ParentRunner.java:413)
	at org.junit.runners.Suite.runChild(Suite.java:128)
	at org.junit.runners.Suite.runChild(Suite.java:27)
	at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
	at org.apache.maven.surefire.junitcore.pc.Scheduler$1.run(Scheduler.java:398)
	at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:539)
	at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
	at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1136)
	at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635)
	at java.base/java.lang.Thread.run(Thread.java:840)
################################################################################
# testExamples[10: semantic validation of {0} on level {1} expecting {2} structural/logical errors and MzTab to be null: {3}]
################################################################################
Testing example: minimal-m-2.0.mztab
[Error-2008] line -1: "assay[1]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[2]	<name>" MUST be defined in the metadata section.

Check warning on line 0 in org.lifstools.mztab2.io.MZTabFileParserTest

See this annotation in the file changed.

@github-actions github-actions / Test Results

testExamples[11: semantic validation of {0} on level {1} expecting {2} structural/logical errors and MzTab to be null: {3}] (org.lifstools.mztab2.io.MZTabFileParserTest) failed 

io/target/surefire-reports/TEST-org.lifstools.mztab2.io.MZTabFileParserTest.xml [took 0s]
Raw output 
[Error-2008] line -1: "assay[1] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[2] <name>" MUST be defined in the metadata section.
java.lang.AssertionError: 
[Error-2008] line -1: "assay[1]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[2]	<name>" MUST be defined in the metadata section.


	at org.junit.Assert.fail(Assert.java:89)
	at org.lifstools.mztab2.io.TestResources.parseResource(TestResources.java:55)
	at org.lifstools.mztab2.io.MZTabFileParserTest.testExample(MZTabFileParserTest.java:135)
	at org.lifstools.mztab2.io.MZTabFileParserTest.testExamples(MZTabFileParserTest.java:125)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
	at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.base/java.lang.reflect.Method.invoke(Method.java:569)
	at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:59)
	at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
	at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:56)
	at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17)
	at org.junit.rules.TestWatcher$1.evaluate(TestWatcher.java:61)
	at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
	at org.junit.runners.BlockJUnit4ClassRunner$1.evaluate(BlockJUnit4ClassRunner.java:100)
	at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:366)
	at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:103)
	at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:63)
	at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
	at org.apache.maven.surefire.junitcore.pc.Scheduler$1.run(Scheduler.java:398)
	at org.apache.maven.surefire.junitcore.pc.InvokerStrategy.schedule(InvokerStrategy.java:54)
	at org.apache.maven.surefire.junitcore.pc.Scheduler.schedule(Scheduler.java:355)
	at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329)
	at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66)
	at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293)
	at org.junit.runners.ParentRunner.run(ParentRunner.java:413)
	at org.junit.runners.Suite.runChild(Suite.java:128)
	at org.junit.runners.Suite.runChild(Suite.java:27)
	at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
	at org.apache.maven.surefire.junitcore.pc.Scheduler$1.run(Scheduler.java:398)
	at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:539)
	at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
	at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1136)
	at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635)
	at java.base/java.lang.Thread.run(Thread.java:840)
################################################################################
# testExamples[11: semantic validation of {0} on level {1} expecting {2} structural/logical errors and MzTab to be null: {3}]
################################################################################
Testing example: minimal-m-2.0.mztab
[Error-2008] line -1: "assay[1]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[2]	<name>" MUST be defined in the metadata section.

Check warning on line 0 in org.lifstools.mztab2.io.MZTabFileParserTest

See this annotation in the file changed.

@github-actions github-actions / Test Results

testExamples[12: semantic validation of {0} on level {1} expecting {2} structural/logical errors and MzTab to be null: {3}] (org.lifstools.mztab2.io.MZTabFileParserTest) failed 

io/target/surefire-reports/TEST-org.lifstools.mztab2.io.MZTabFileParserTest.xml [took 0s]
Raw output 
[Error-2008] line -1: "assay[1] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[2] <name>" MUST be defined in the metadata section.
java.lang.AssertionError: 
[Error-2008] line -1: "assay[1]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[2]	<name>" MUST be defined in the metadata section.


	at org.junit.Assert.fail(Assert.java:89)
	at org.lifstools.mztab2.io.TestResources.parseResource(TestResources.java:55)
	at org.lifstools.mztab2.io.MZTabFileParserTest.testExample(MZTabFileParserTest.java:135)
	at org.lifstools.mztab2.io.MZTabFileParserTest.testExamples(MZTabFileParserTest.java:125)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
	at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.base/java.lang.reflect.Method.invoke(Method.java:569)
	at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:59)
	at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
	at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:56)
	at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17)
	at org.junit.rules.TestWatcher$1.evaluate(TestWatcher.java:61)
	at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
	at org.junit.runners.BlockJUnit4ClassRunner$1.evaluate(BlockJUnit4ClassRunner.java:100)
	at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:366)
	at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:103)
	at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:63)
	at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
	at org.apache.maven.surefire.junitcore.pc.Scheduler$1.run(Scheduler.java:398)
	at org.apache.maven.surefire.junitcore.pc.InvokerStrategy.schedule(InvokerStrategy.java:54)
	at org.apache.maven.surefire.junitcore.pc.Scheduler.schedule(Scheduler.java:355)
	at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329)
	at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66)
	at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293)
	at org.junit.runners.ParentRunner.run(ParentRunner.java:413)
	at org.junit.runners.Suite.runChild(Suite.java:128)
	at org.junit.runners.Suite.runChild(Suite.java:27)
	at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
	at org.apache.maven.surefire.junitcore.pc.Scheduler$1.run(Scheduler.java:398)
	at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:539)
	at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
	at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1136)
	at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635)
	at java.base/java.lang.Thread.run(Thread.java:840)
################################################################################
# testExamples[12: semantic validation of {0} on level {1} expecting {2} structural/logical errors and MzTab to be null: {3}]
################################################################################
Testing example: minimal-m-2.0.mztab
[Error-2008] line -1: "assay[1]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[2]	<name>" MUST be defined in the metadata section.

Check warning on line 0 in org.lifstools.mztab2.io.MzTabWriterTest

See this annotation in the file changed.

@github-actions github-actions / Test Results

testReadWriteRoundtripWithJacksonLda2MouseLiver (org.lifstools.mztab2.io.MzTabWriterTest) failed 

io/target/surefire-reports/TEST-org.lifstools.mztab2.io.MzTabWriterTest.xml [took 0s]
Raw output 
[Error-2008] line -1: "assay[1] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[2] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[3] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[4] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[5] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[6] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[7] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[8] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[9] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[10] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[11] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[12] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[13] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[14] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[15] <name>" MUST be defined in the metadata section.
java.lang.AssertionError: 
[Error-2008] line -1: "assay[1]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[2]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[3]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[4]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[5]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[6]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[7]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[8]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[9]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[10]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[11]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[12]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[13]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[14]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[15]	<name>" MUST be defined in the metadata section.


	at org.junit.Assert.fail(Assert.java:89)
	at org.lifstools.mztab2.io.TestResources.parseResource(TestResources.java:55)
	at org.lifstools.mztab2.io.TestResources.parseResource(TestResources.java:44)
	at org.lifstools.mztab2.io.MzTabWriterTest.testReadWriteRoundtripWithJacksonLda2MouseLiver(MzTabWriterTest.java:330)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
	at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.base/java.lang.reflect.Method.invoke(Method.java:569)
	at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:59)
	at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
	at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:56)
	at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17)
	at org.junit.rules.TestWatcher$1.evaluate(TestWatcher.java:61)
	at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
	at org.junit.runners.BlockJUnit4ClassRunner$1.evaluate(BlockJUnit4ClassRunner.java:100)
	at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:366)
	at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:103)
	at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:63)
	at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
	at org.apache.maven.surefire.junitcore.pc.Scheduler$1.run(Scheduler.java:398)
	at org.apache.maven.surefire.junitcore.pc.InvokerStrategy.schedule(InvokerStrategy.java:54)
	at org.apache.maven.surefire.junitcore.pc.Scheduler.schedule(Scheduler.java:355)
	at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329)
	at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66)
	at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293)
	at org.junit.rules.ExternalResource$1.evaluate(ExternalResource.java:54)
	at org.junit.rules.RunRules.evaluate(RunRules.java:20)
	at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
	at org.junit.runners.ParentRunner.run(ParentRunner.java:413)
	at org.junit.runners.Suite.runChild(Suite.java:128)
	at org.junit.runners.Suite.runChild(Suite.java:27)
	at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
	at org.apache.maven.surefire.junitcore.pc.Scheduler$1.run(Scheduler.java:398)
	at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:539)
	at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
	at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1136)
	at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635)
	at java.base/java.lang.Thread.run(Thread.java:840)
################################################################################
# testReadWriteRoundtripWithJacksonLda2MouseLiver
################################################################################
[Error-2008] line -1: "assay[1]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[2]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[3]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[4]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[5]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[6]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[7]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[8]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[9]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[10]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[11]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[12]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[13]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[14]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[15]	<name>" MUST be defined in the metadata section.

Check warning on line 0 in org.lifstools.mztab2.io.MzTabWriterTest

See this annotation in the file changed.

@github-actions github-actions / Test Results

testReadWriteRoundtripWithJacksonLda2StdMix (org.lifstools.mztab2.io.MzTabWriterTest) failed 

io/target/surefire-reports/TEST-org.lifstools.mztab2.io.MzTabWriterTest.xml [took 0s]
Raw output 
[Error-2008] line -1: "assay[1] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[2] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[3] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[4] <name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[5] <name>" MUST be defined in the metadata section.
java.lang.AssertionError: 
[Error-2008] line -1: "assay[1]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[2]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[3]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[4]	<name>" MUST be defined in the metadata section.

[Error-2008] line -1: "assay[5]	<name>" MUST be defined in the metadata section.


	at org.junit.Assert.fail(Assert.java:89)
	at org.lifstools.mztab2.io.TestResources.parseResource(TestResources.java:55)
	at org.lifstools.mztab2.io.TestResources.parseResource(TestResources.java:44)
	at org.lifstools.mztab2.io.MzTabWriterTest.testReadWriteRoundtripWithJacksonLda2StdMix(MzTabWriterTest.java:312)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
	at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.base/java.lang.reflect.Method.invoke(Method.java:569)
	at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:59)
	at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
	at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:56)
	at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17)
	at org.junit.rules.TestWatcher$1.evaluate(TestWatcher.java:61)
	at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
	at org.junit.runners.BlockJUnit4ClassRunner$1.evaluate(BlockJUnit4ClassRunner.java:100)
	at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:366)
	at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:103)
	at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:63)
	at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
	at org.apache.maven.surefire.junitcore.pc.Scheduler$1.run(Scheduler.java:398)
	at org.apache.maven.surefire.junitcore.pc.InvokerStrategy.schedule(InvokerStrategy.java:54)
	at org.apache.maven.surefire.junitcore.pc.Scheduler.schedule(Scheduler.java:355)
	at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329)
	at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66)
	at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293)
	at org.junit.rules.ExternalResource$1.evaluate(ExternalResource.java:54)
	at org.junit.rules.RunRules.evaluate(RunRules.java:20)
	at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
	at org.junit.runners.ParentRunner.run(ParentRunner.java:413)
	at org.junit.runners.Suite.runChild(Suite.java:128)
	at org.junit.runners.Suite.runChild(Suite.java:27)
	at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
	at org.apache.maven.surefire.junitcore.pc.Scheduler$1.run(Scheduler.java:398)
	at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:539)
	at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
	at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1136)
	at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635)
	at java.base/java.lang.Thread.run(Thread.java:840)
################################################################################
# testReadWriteRoundtripWithJacksonLda2StdMix
################################################################################
[Error-2008] line -1: "assay[1]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[2]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[3]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[4]	<name>" MUST be defined in the metadata section.
[Error-2008] line -1: "assay[5]	<name>" MUST be defined in the metadata section.

Check warning on line 0 in uk.ac.ebi.pride.jmztab2.utils.parser.MTDLineParserTest

See this annotation in the file changed.

@github-actions github-actions / Test Results

testCreateMetadata (uk.ac.ebi.pride.jmztab2.utils.parser.MTDLineParserTest) failed 

io/target/surefire-reports/TEST-uk.ac.ebi.pride.jmztab2.utils.parser.MTDLineParserTest.xml [took 0s]
Raw output 
java.lang.AssertionError
	at org.junit.Assert.fail(Assert.java:87)
	at org.junit.Assert.assertTrue(Assert.java:42)
	at org.junit.Assert.assertTrue(Assert.java:53)
	at uk.ac.ebi.pride.jmztab2.utils.parser.MTDLineParserTest.testCreateMetadata(MTDLineParserTest.java:627)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
	at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.base/java.lang.reflect.Method.invoke(Method.java:569)
	at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:59)
	at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
	at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:56)
	at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17)
	at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:26)
	at org.junit.rules.TestWatcher$1.evaluate(TestWatcher.java:61)
	at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
	at org.junit.runners.BlockJUnit4ClassRunner$1.evaluate(BlockJUnit4ClassRunner.java:100)
	at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:366)
	at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:103)
	at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:63)
	at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
	at org.apache.maven.surefire.junitcore.pc.Scheduler$1.run(Scheduler.java:398)
	at org.apache.maven.surefire.junitcore.pc.InvokerStrategy.schedule(InvokerStrategy.java:54)
	at org.apache.maven.surefire.junitcore.pc.Scheduler.schedule(Scheduler.java:355)
	at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329)
	at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66)
	at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293)
	at org.junit.rules.ExternalResource$1.evaluate(ExternalResource.java:54)
	at org.junit.rules.ExternalResource$1.evaluate(ExternalResource.java:54)
	at org.junit.rules.RunRules.evaluate(RunRules.java:20)
	at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
	at org.junit.runners.ParentRunner.run(ParentRunner.java:413)
	at org.junit.runners.Suite.runChild(Suite.java:128)
	at org.junit.runners.Suite.runChild(Suite.java:27)
	at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
	at org.apache.maven.surefire.junitcore.pc.Scheduler$1.run(Scheduler.java:398)
	at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:539)
	at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
	at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1136)
	at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635)
	at java.base/java.lang.Thread.run(Thread.java:840)
################################################################################
# testCreateMetadata
################################################################################

Check warning on line 0 in org.lifstools.mztab2.io.validators.AssayValidatorTest

See this annotation in the file changed.

@github-actions github-actions / Test Results

testValidateRefineAssayHasMsRun (org.lifstools.mztab2.io.validators.AssayValidatorTest) failed 

io/target/surefire-reports/TEST-org.lifstools.mztab2.io.validators.AssayValidatorTest.xml [took 0s]
Raw output 
expected:<1> but was:<2>
java.lang.AssertionError: expected:<1> but was:<2>
	at org.junit.Assert.fail(Assert.java:89)
	at org.junit.Assert.failNotEquals(Assert.java:835)
	at org.junit.Assert.assertEquals(Assert.java:647)
	at org.junit.Assert.assertEquals(Assert.java:633)
	at org.lifstools.mztab2.io.validators.AssayValidatorTest.testValidateRefineAssayHasMsRun(AssayValidatorTest.java:83)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
	at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.base/java.lang.reflect.Method.invoke(Method.java:569)
	at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:59)
	at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
	at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:56)
	at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17)
	at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
	at org.junit.runners.BlockJUnit4ClassRunner$1.evaluate(BlockJUnit4ClassRunner.java:100)
	at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:366)
	at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:103)
	at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:63)
	at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
	at org.apache.maven.surefire.junitcore.pc.Scheduler$1.run(Scheduler.java:398)
	at org.apache.maven.surefire.junitcore.pc.InvokerStrategy.schedule(InvokerStrategy.java:54)
	at org.apache.maven.surefire.junitcore.pc.Scheduler.schedule(Scheduler.java:355)
	at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329)
	at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66)
	at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293)
	at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306)
	at org.junit.runners.ParentRunner.run(ParentRunner.java:413)
	at org.junit.runners.Suite.runChild(Suite.java:128)
	at org.junit.runners.Suite.runChild(Suite.java:27)
	at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331)
	at org.apache.maven.surefire.junitcore.pc.Scheduler$1.run(Scheduler.java:398)
	at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:539)
	at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
	at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1136)
	at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635)
	at java.base/java.lang.Thread.run(Thread.java:840)
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