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WIP: Add Openpmd Support#77

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rfbird wants to merge 83 commits intodevellanl/vpic:develfrom openpmdlanl/vpic:openpmdCopy head branch name to clipboard

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Commits

Commits on Dec 30, 2018

• Format tweaks.

  

  Dave Nystrom

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Commits on Jan 7, 2019

• Fix what appears to be a memory error that dates back to the v407 version.

  

  Dave Nystrom

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Commits on Jan 11, 2019

• Merge branch 'devel' of /home/wdn/repos/git/vpic into devel_wdn

  

  Dave Nystrom

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Commits on Jan 31, 2019

• Add configurable and documented build scripts for building VPIC on LANL ATS-1 and CTS-1 machines.

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  Dave Nystrom

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• Additional updates to documentation.

  

  Dave Nystrom

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• Update compiler option documentation to make more accurate.

  

  Dave Nystrom

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• Reorder options a bit.

  

  Dave Nystrom

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• For the lanl-ats1 script, make sure that the Cray programming environment

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  Dave Nystrom

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Commits on Feb 2, 2019

• Merge branch 'devel' of ../vpic_losalamos_devel into devel

  

  Dave Nystrom

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Commits on Feb 11, 2019

• Merge branch 'devel' of ../vpic_losalamos_devel into devel

  

  Dave Nystrom

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• Fix issues and errors in use of float literals introduced in a previous commit.

  

  Dave Nystrom

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• Add CMake support for configuring a VPIC build with the legacy particle sort

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  Dave Nystrom

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Commits on Feb 19, 2019

• Separate lanl-ats1 script into two separate scripts, one for Haswell nodes and one for KNL nodes.

  

  Dave Nystrom

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Commits on Feb 20, 2019

• Reorder build configuration options to something that seems more sensible.

  

  Dave Nystrom

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Commits on Feb 28, 2019

• Merge branch 'devel' into devel

  rfbird

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• Add more documentation about various available CMake configuration variables.

  

  Dave Nystrom

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• Merge branch 'devel' of github.com:dnystrom1/vpic into devel

  

  Dave Nystrom

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Commits on Mar 4, 2019

• Merge branch 'devel' of ../vpic_losalamos_devel into devel

  

  Dave Nystrom

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• Merge branch 'devel' of /home/wdn/repos/git/vpic into devel_wdn

  

  Dave Nystrom

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• Merge branch 'devel_wdn' of /home/wdn/repos/git/vpic into devel_wdn

  

  Dave Nystrom

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Commits on Mar 11, 2019

• Switch all C files to C++ files unless it is explicit that they need to be C files.

  

  Dave Nystrom

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Commits on Jul 10, 2019

• Format tweaks.

  

  Dave Nystrom

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• Initial beginning of ARM Neon intrinsics support.

  

  Dave Nystrom

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Commits on Jul 15, 2019

• Add CMake support for ARM NEON intrinsics.

  

  Dave Nystrom

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• Add NEON support for v4float binary operators.

  

  Dave Nystrom

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• Add float32x4_t type to the v4_neon union.

  

  Dave Nystrom

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• Add ARM NEON intrinsics support for fma and fms.

  

  Dave Nystrom

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• Remove some tabs. Format tweaks. Add NEON intrinsics support for contructors.

  

  Dave Nystrom

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• Add NEON intrinsics support for load_4x4_tr and store_4x4_tr.

  

  Dave Nystrom

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• Add NEON intrinsics support for v4float assignment operators.

  

  Dave Nystrom

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• Add NEON intrinsics support for rsqrt and rcp functions.

  

  Dave Nystrom

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• Add NEON intrinsics support for transpose function.

  

  Dave Nystrom

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• Fix a typo.

  

  Dave Nystrom

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Commits on Jul 16, 2019

• Add support for benchmarking center_p and uncenter_p.

  

  Dave Nystrom

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• Change number of iterations for uncenter/center loop.

  

  Dave Nystrom

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Commits on Jul 17, 2019

• Add NEON intrinsic support for v4float logical operators to v4_neon.h.

  

  Dave Nystrom

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• Try an implementation of load/store transpose operations using vld4q_f32 and vst4q_f32.

  

  Dave Nystrom

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Commits on Jul 18, 2019

• Comment out new implementations for load_4x4_tr and store_4x4_tr since they will

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  Dave Nystrom

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Commits on Jul 22, 2019

• More work on v4_neon support.

  

  Dave Nystrom

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• Add another NEON implementation of transpose.

  

  Dave Nystrom

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Commits on Jul 23, 2019

• Add new NEON implementations for load and store transpose functions.

  

  Dave Nystrom

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• Try another idea for implementing the transpose function.

  

  Dave Nystrom

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Commits on Jul 25, 2019

• Add support for using load_4x8_tr and load_4x16_tr for the ARM NEON case.

  

  Dave Nystrom

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• Add test cases to V4 unit tests.

  

  Dave Nystrom

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• Fix a declaration error.

  

  Dave Nystrom

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• Test different memory alignment for V4 NEON implementation.

  

  Dave Nystrom

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Commits on Jul 28, 2019

• Format tweak.

  

  Dave Nystrom

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Commits on Jul 29, 2019

• Do not use special test version of V4 NEON implementations of center_p and uncenter_p.

  

  Dave Nystrom

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• Revert rcp and rsqrt functions back to their portable versions to try to isolate NaN problem.

  

  Dave Nystrom

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Commits on Aug 5, 2019

• Format tweaks and cleanup before merging into other branches.

  

  Dave Nystrom

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  bd000c4

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• Fix issue with undefined symbol.

  

  Dave Nystrom

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  d938848

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• Try a fix to a unit test failure for the Altivec case.

  

  Dave Nystrom

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• Modify TEST_CASE_load_4x2_tr to see if I can get it to pass on IBM with Altivec.

  

  Dave Nystrom

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• Merge branch 'devel' of /home/wdn/repos/git/vpic into devel

  

  Dave Nystrom

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• Merge branch 'devel' of /home/wdn/repos/git/vpic into devel_wdn

  

  Dave Nystrom

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Commits on Aug 6, 2019

• Remove a test hack.

  

  Dave Nystrom

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• Merge branch 'devel_wdn' of /home/wdn/repos/git/vpic into devel_wdn

  

  Dave Nystrom

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• Remove some experimental NEON intrinsic code.

  

  Dave Nystrom

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• Remove more code that was used for testing ARM NEON intrinsics version.

  

  Dave Nystrom

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• Remove some dead code.

  

  Dave Nystrom

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• Do not disable dynamic resizing since it is not disabled in github.

  

  Dave Nystrom

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Commits on Aug 13, 2019

• added global partition data to grid

  rfbird

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• first pass adding a compiling port of viou for HDF5 vpic IO

  rfbird

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• fixed small bug in global topoly setting and add field_interval value to test deck

  rfbird

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• updated field interval to be the correct value

  rfbird

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• Merge branch 'devel' of https://github.com/lanl/vpic into hdf5

  rfbird

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Commits on Oct 10, 2019

• clean up hdf5 build system. require paralle, and includes and guard example deck agaisnt no hdf5

  rfbird

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• merge master and update build system to pass defines at the right time

  rfbird

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• allow user to change dumping flags in the deck

  rfbird

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Commits on Oct 14, 2019

• default init hdf5 dumping structs

  rfbird

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Commits on Oct 15, 2019

• temporarily disable second hydro dumping species as it breaks the current ported apporach

  rfbird

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• modify sprinf of size_t to be the correct zu

  rfbird

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• remove scidac 407 ifdefs

  rfbird

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• fix global static and re-enable multiple species dumping

  rfbird

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Commits on Oct 16, 2019

• first pass adding support for converting p->i to a global i

  rfbird

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• add loop ovr particles and ability to write custom global pi to file

  rfbird

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Commits on Oct 22, 2019

• tidied up global particle id convert, close to correct now

  rfbird

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Commits on Oct 29, 2019

• first pass where build system does something useful

  rfbird

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Commits on Oct 30, 2019

• First pass where data dumps cbx

  rfbird

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Commits on Nov 4, 2019

• data verified using python

  rfbird

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• quick tidy up and add j and e

  rfbird

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Commits on Nov 5, 2019

• add particle dumping via openpmd (close but not passing openpmd file validator becasue of missing timeOffset)

  rfbird

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• Apply HDF5 fixes to openPMD branch

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