continue updating figures

lammpstutorials · Aug 7, 2024 · 3f776e2 · 3f776e2
1 parent 2c1da5f
commit 3f776e2
Show file tree

Hide file tree

Showing 23 changed files with 155 additions and 125 deletions.
diff --git a/...tutorials/figures/level3/water-adsorption-in-silica/dimension-article-light.png b/...tutorials/figures/level3/water-adsorption-in-silica/dimension-article-light.png
diff --git a/...ource/tutorials/figures/level3/water-adsorption-in-silica/dimension-article.png b/...ource/tutorials/figures/level3/water-adsorption-in-silica/dimension-article.png
diff --git a/...torials/figures/level3/water-adsorption-in-silica/dimensions_evolution-dark.png b/...torials/figures/level3/water-adsorption-in-silica/dimensions_evolution-dark.png
diff --git a/...tutorials/figures/level3/water-adsorption-in-silica/dimensions_evolution-dm.png b/...tutorials/figures/level3/water-adsorption-in-silica/dimensions_evolution-dm.png
diff --git a/...orials/figures/level3/water-adsorption-in-silica/dimensions_evolution-light.png b/...orials/figures/level3/water-adsorption-in-silica/dimensions_evolution-light.png
diff --git a/...ce/tutorials/figures/level3/water-adsorption-in-silica/dimensions_evolution.png b/...ce/tutorials/figures/level3/water-adsorption-in-silica/dimensions_evolution.png
diff --git a/...ce/tutorials/figures/level3/water-adsorption-in-silica/number-article-light.png b/...ce/tutorials/figures/level3/water-adsorption-in-silica/number-article-light.png
diff --git a/...x/source/tutorials/figures/level3/water-adsorption-in-silica/number-article.png b/...x/source/tutorials/figures/level3/water-adsorption-in-silica/number-article.png
diff --git a/...e/tutorials/figures/level3/water-adsorption-in-silica/number_evolution-dark.png b/...e/tutorials/figures/level3/water-adsorption-in-silica/number_evolution-dark.png
diff --git a/...rce/tutorials/figures/level3/water-adsorption-in-silica/number_evolution-dm.png b/...rce/tutorials/figures/level3/water-adsorption-in-silica/number_evolution-dm.png
diff --git a/.../tutorials/figures/level3/water-adsorption-in-silica/number_evolution-light.png b/.../tutorials/figures/level3/water-adsorption-in-silica/number_evolution-light.png
diff --git a/.../source/tutorials/figures/level3/water-adsorption-in-silica/number_evolution-pyplot.ipynb b/.../source/tutorials/figures/level3/water-adsorption-in-silica/number_evolution-pyplot.ipynb
diff --git a/...source/tutorials/figures/level3/water-adsorption-in-silica/number_evolution.png b/...source/tutorials/figures/level3/water-adsorption-in-silica/number_evolution.png
diff --git a/...torials/figures/level3/water-adsorption-in-silica/number_evolution_zif-dark.png b/...torials/figures/level3/water-adsorption-in-silica/number_evolution_zif-dark.png
diff --git a/...orials/figures/level3/water-adsorption-in-silica/number_evolution_zif-light.png b/...orials/figures/level3/water-adsorption-in-silica/number_evolution_zif-light.png
diff --git a/...torials/figures/level3/water-adsorption-in-silica/temperature-article-light.png b/...torials/figures/level3/water-adsorption-in-silica/temperature-article-light.png
diff --git a/...rce/tutorials/figures/level3/water-adsorption-in-silica/temperature-article.png b/...rce/tutorials/figures/level3/water-adsorption-in-silica/temperature-article.png
diff --git a/...orials/figures/level3/water-adsorption-in-silica/temperature_evolution-dark.png b/...orials/figures/level3/water-adsorption-in-silica/temperature_evolution-dark.png
diff --git a/...utorials/figures/level3/water-adsorption-in-silica/temperature_evolution-dm.png b/...utorials/figures/level3/water-adsorption-in-silica/temperature_evolution-dm.png
diff --git a/...rials/figures/level3/water-adsorption-in-silica/temperature_evolution-light.png b/...rials/figures/level3/water-adsorption-in-silica/temperature_evolution-light.png
diff --git a/...ce/tutorials/figures/level3/water-adsorption-in-silica/temperature_evolution-pyplot.ipynb b/...ce/tutorials/figures/level3/water-adsorption-in-silica/temperature_evolution-pyplot.ipynb
diff --git a/...e/tutorials/figures/level3/water-adsorption-in-silica/temperature_evolution.png b/...e/tutorials/figures/level3/water-adsorption-in-silica/temperature_evolution.png
diff --git a/docs/sphinx/source/tutorials/level3/water-adsorption-in-silica.rst b/docs/sphinx/source/tutorials/level3/water-adsorption-in-silica.rst
@@ -247,11 +247,11 @@ Generation of the silica block
     bad configuration, probably harmless here),
     the temperature follows well the desired annealing procedure.
 
-.. figure:: ../figures/level3/water-adsorption-in-silica/temperature_evolution-dark.png
+.. figure:: ../figures/level3/water-adsorption-in-silica/temperature_evolution-dm.png
     :alt: silica temperature during annealing, from melt to solid
     :class: only-dark
 
-.. figure:: ../figures/level3/water-adsorption-in-silica/temperature_evolution-light.png
+.. figure:: ../figures/level3/water-adsorption-in-silica/temperature_evolution.png
     :alt: silica temperature during annealing, from melt to solid
     :class: only-light
 
@@ -266,11 +266,11 @@ Generation of the silica block
     stage of the simulation, and then anisotropically by plotting the evolution of the
     box dimensions over time.
 
-.. figure:: ../figures/level3/water-adsorption-in-silica/dimensions_evolution-dark.png
+.. figure:: ../figures/level3/water-adsorption-in-silica/dimensions_evolution-dm.png
     :alt: box dimensions during annealing, from melt to solid
     :class: only-dark
 
-.. figure:: ../figures/level3/water-adsorption-in-silica/dimensions_evolution-light.png
+.. figure:: ../figures/level3/water-adsorption-in-silica/dimensions_evolution.png
     :alt: box dimensions during annealing, from melt to solid
     :class: only-light
 
@@ -768,11 +768,11 @@ GCMC simulation
     Once the crack is filled with water molecules, the number of
     molecules reaches a plateau.
 
-.. figure:: ../figures/level3/water-adsorption-in-silica/number_evolution-dark.png
+.. figure:: ../figures/level3/water-adsorption-in-silica/number_evolution-dm.png
     :alt: number of water molecules added by the LAMMPS gcmc
     :class: only-dark
 
-.. figure:: ../figures/level3/water-adsorption-in-silica/number_evolution-light.png
+.. figure:: ../figures/level3/water-adsorption-in-silica/number_evolution.png
     :alt: number of water molecules added by the LAMMPS gcmc
     :class: only-light