🚸 Add setup vignette to website navbar #390
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| on: | |
| push: | |
| branches: [main, master] | |
| pull_request: | |
| branches: [main, master] | |
| release: | |
| types: [published] | |
| workflow_dispatch: | |
| name: pkgdown.yaml | |
| permissions: read-all | |
| jobs: | |
| pkgdown: | |
| runs-on: ubuntu-latest | |
| # Only restrict concurrency for non-PR jobs | |
| concurrency: | |
| group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| LAMIN_API_KEY: ${{ secrets.LAMIN_API_KEY_TESTUSER1 }} | |
| permissions: | |
| contents: write | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.x" | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::pkgdown, local::. | |
| needs: website | |
| quarto-version: pre-release | |
| - name: Install {tiledbsoma} if not already installed | |
| run: | | |
| if (!requireNamespace("tiledbsoma", quietly = TRUE)) { | |
| options(repos = c("https://chanzuckerberg.r-universe.dev", getOption("repos"))) | |
| pak::pkg_install("tiledbsoma") | |
| } else { | |
| message("Package 'tiledbsoma' already installed") | |
| } | |
| shell: Rscript {0} | |
| - name: Setup Python environment | |
| run: | | |
| laminr::install_lamindb(extra_packages = c("s3fs")) | |
| shell: Rscript {0} | |
| - name: Log in to Lamin | |
| run: | | |
| reticulate::use_virtualenv("r-lamindb") | |
| laminr::lamin_login() | |
| shell: Rscript {0} | |
| - name: Set lamindata as default instance | |
| run: | | |
| reticulate::use_virtualenv("r-lamindb") | |
| laminr::lamin_connect("laminlabs/lamindata") | |
| shell: Rscript {0} | |
| - name: Check whether we can import lamindb and connect to the default instance | |
| run: | | |
| reticulate::use_virtualenv("r-lamindb") | |
| reticulate::py_config() | |
| reticulate::import("lamindb") | |
| laminr::connect() | |
| shell: Rscript {0} | |
| - name: Build site | |
| run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE) | |
| shell: Rscript {0} | |
| - name: Create built site artifact | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: pkgdown-site | |
| path: docs | |
| - name: Deploy to GitHub pages 🚀 | |
| if: github.event_name != 'pull_request' | |
| uses: JamesIves/github-pages-deploy-action@v4 | |
| with: | |
| clean: false | |
| branch: gh-pages | |
| folder: docs |