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Added chimera filtering scripts.#1

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Commits

Commits on Jun 30, 2017

• Added chimera filtering scripts.

  

  Kathleen Furtado

  committed
  6872bc1

• updated

  

  Kathleen Furtado

  committed
  029c090

Commits on Jul 6, 2017

• Added scripts for picking OTUs and discussion on errors.

  

  Kathleen Furtado

  committed
  7e992d2

• new file organization

  

  Kathleen Furtado

  committed
  d6fabbc

• new file organization

  

  Kathleen Furtado

  committed
  1b5f1fb

• new file organization

  

  Kathleen Furtado

  committed
  a65b5ed

• new file organization

  

  Kathleen Furtado

  committed
  d9bb82e

• Added scripts for Merging and converting to FASTA

  

  Kathleen Furtado

  committed
  ee1ad87

Commits on Jul 7, 2017

• Added Scripts for Demultiplexing.

  

  Kathleen Furtado

  committed
  a719545

Commits on Jul 12, 2017

• Added scripts for demultiplexing.

  

  Kathleen Furtado

  committed
  c4fd338

• Added scripts for demultiplexing.

  

  Kathleen Furtado

  committed
  ca23264

Commits on Jul 17, 2017

• Added new scripts for removing adapters with cutadapt.

  

  Kathleen Furtado

  committed
  7f18691

• Added more scripts for cutadapt and demultiplexing.

  

  Kathleen Furtado

  committed
  23f244c

• Added log report for cutadapt.

  

  Kathleen Furtado

  committed
  2aaf866

Commits on Jul 21, 2017

• Added new scripts for trimmomatic and merging.

  

  Kathleen Furtado

  committed
  eb34afe

Commits on Jul 22, 2017

• Added new scripts for demultiplexing various ways.

  

  Kathleen Furtado

  committed
  6dd6261

Commits on Jul 24, 2017

• Added Scripts for chimera detection.

  

  Kathleen Furtado

  committed
  31fc20a

• Added scripts for converting from FASTA+QUAL to FASTQ

  

  Kathleen Furtado

  committed
  d228d78

Commits on Jul 27, 2017

• Added scripts for chimera detection and summarizing fasta files.

  

  Kathleen Furtado

  committed
  dc393ce

• Added scripts for chimera detection and summarizing fasta files.

  

  Kathleen Furtado

  committed
  4f2d4c9

Commits on Sep 1, 2017

• Added Final Scripts in Workflow.

  

  Kathleen Furtado

  committed
  8db692a

• Added final scripts in workflow.

  

  Kathleen Furtado

  committed
  c51ee03

Commits on Jan 8, 2018

• Added new file containing scripts for adjusting OTU tables.

  

  Kathleen Furtado

  authored and

  Kathleen Furtado

  committed
  22c50ce

Commits on Apr 11, 2018

• Added first R Workflow

  

  Kathleen Furtado

  committed
  42b128c