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1. PanGraph-DB PanGraph-DB Public

   Artifact corresponding to the PanGraph-DB framework for performing complex multi-pangenome analyses using a graph database system.

   Jupyter Notebook 3

2. labgem/PPanGGOLiN labgem/PPanGGOLiN Public

   Build a partitioned pangenome graph from microbial genomes

   Python 242 29

3. pirovc/genome_updater pirovc/genome_updater Public

   Bash script to download/update snapshots of files from NCBI genomes repository (refseq/genbank) with track of changes and without redundancy

   Shell 146 15

4. mdmparis/defense-finder mdmparis/defense-finder Public

   Systematic search of all known anti-phage systems.

   Python 77 13