Skip to content

Summer 2020 release
Compare
Choose a tag to compare
@joachimwolff joachimwolff released this 05 Aug 10:24
· 29 commits to master since this release
5
e37e232
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Learn about vigilant mode.
  • Better clustering with MinHash: More accurate, faster loading times, less memory, additional PCA
  • In general: Fast loading of matrices. This version is up to 19 times faster (10 kb matrices scHiCExplorer version 4: 58 minutes. Version 5: < 3 minutes)
  • Support for scool format as defined with version 0.8.9 of cooler
  • scHicManageScool: Tool to update old scool (version 4 or less of scHiCExplorer) to new version. Option to extract a matrix to a single cool
  • scHicConvertFormat: Tool to convert a scool matrix to the file and folder structure scHiCluster needs
  • Option to plot PC1 vs PC2 on cluster results for scHicCluster and scHicClusterMinHash
  • scHicClusterMinHash: New additional cluster algorithms: birch, agglomerative (ward, average, single, complete)
  • scHicCluster and scHicClusterMinHash: Option to work on intra-chromosomal data only
  • Multiple bug fixes
  • Improved plotting of scHicPlotConsensusMatrices and scHicPlotClusterProfile
Assets 2
Loading