release: version 1.0.7 🚀

jkobject · Sep 4, 2024 · db2fdfd · db2fdfd
1 parent 450b0d8
commit db2fdfd
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Showing 3 changed files with 37 additions and 47 deletions.
diff --git a/HISTORY.md b/HISTORY.md
@@ -2,6 +2,11 @@ Changelog
 =========
 
 
+(unreleased)
+------------
+- Release: version 1.0.6 🚀 [jkobject]
+
+
 1.0.6 (2024-09-04)
 ------------------
 - Release: version 1.0.6 🚀 [jkobject]

diff --git a/bengrn/VERSION b/bengrn/VERSION
@@ -1 +1 @@
-1.0.6
+1.0.7
diff --git a/pyproject.toml b/pyproject.toml
@@ -4,10 +4,12 @@ build-backend = "poetry.core.masonry.api"
 
 [tool.poetry]
 name = "bengrn"
-version = "1.0.6"
+version = "1.0.7"
+license = "MIT"
 description = "benchmarking gene regulatory networks"
-authors = [ "jkobject",]
+authors = [ "jeremie kalfon"]
 readme = "README.md"
+repository = "https://github.com/jkobject/benGRN"
 keywords = [ "scRNAseq", "GRN", "gene regulatory networks", "benchmark", "comp bio", "scPRINT",]
 
 [tool.poetry.dependencies]
@@ -25,49 +27,32 @@ pandas = ">=2.0.0"
 grnndata = "*"
 omnipath = "*"
 dask-expr = "*"
+pytorch-fast-transformers = { version = "*", optional = true }
+pytest = { version = "^7.4.3", optional = true }
+coverage = { version = "^7.3.2", optional = true }
+flake8 = { version = "^6.1.0", optional = true }
+black = { version = "^23.10.1", optional = true }
+isort = { version = "^5.12.0", optional = true }
+pytest-cov = { version = "^4.1.0", optional = true }
+mypy = { version = "^1.6.1", optional = true }
+gitchangelog = { version = "^3.0.4", optional = true }
+mkdocs = { version = "^1.5.3", optional = true }
 
 [tool.poetry.extras]
-dev = [ "pytest", "coverage", "flake8", "black", "toml", "isort", "pytest-cov", "mypy", "gitchangelog", "mkdocs", "mkdocs-git-revision-date-localized-plugin", "mkdocstrings", "mkdocs-git-authors-plugin", "mkdocs-jupyter", "mkdocstrings-python",]
-
-[tool.poetry.scripts]
-bengrn = "bengrn.__main__:main"
-
-[tool.poetry.dependencies.pytest]
-version = "1.0.6"
-optional = true
-
-[tool.poetry.dependencies.coverage]
-version = "1.0.6"
-optional = true
-
-[tool.poetry.dependencies.flake8]
-version = "1.0.6"
-optional = true
-
-[tool.poetry.dependencies.black]
-version = "1.0.6"
-optional = true
-
-[tool.poetry.dependencies.isort]
-version = "1.0.6"
-optional = true
-
-[tool.poetry.dependencies.pytest-cov]
-version = "1.0.6"
-optional = true
-
-[tool.poetry.dependencies.mypy]
-version = "1.0.6"
-optional = true
-
-[tool.poetry.dependencies.gitchangelog]
-version = "1.0.6"
-optional = true
-
-[tool.poetry.dependencies.mkdocs]
-version = "1.0.6"
-optional = true
-
-[tool.poetry.dependencies.toml]
-version = "1.0.6"
-optional = true
+dev = [
+  "pytest",
+  "coverage",
+  "flake8",
+  "black",
+  "toml",
+  "isort",
+  "pytest-cov",
+  "mypy",
+  "gitchangelog",
+  "mkdocs",
+  "mkdocs-git-revision-date-localized-plugin",
+  "mkdocstrings",
+  "mkdocs-git-authors-plugin",
+  "mkdocs-jupyter",
+  "mkdocstrings-python",
+]