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isugifNF

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  1. polishCLR polishCLR Public

    A nextflow pipeline for polishing CLR assemblies

    Nextflow 16 4

  2. GATK-flow GATK-flow Public

    Nextflow implementation of the GATK HaplotypeCaller pipeline

    Nextflow 12 2

  3. assemblyStats assemblyStats Public

    Run Assembly statistics on a genome assembly (BUSCO and assemblyStats and new_Assemblathon.pl)

    Perl 4 5

  4. blast blast Public

    NextFlow implementation of BLAST program

    Nextflow 3 4

  5. tutorial tutorial Public

    Tutorial on how to use nextflow to create a workflow for blast

    Nextflow 3 1

  6. parallel parallel Public

    Nextflow 1

Repositories

Showing 10 of 12 repositories
  • GATK-flow Public

    Nextflow implementation of the GATK HaplotypeCaller pipeline

    isugifNF/GATK-flow’s past year of commit activity
    Nextflow 12 2 2 1 Updated Feb 21, 2024
  • polishCLR Public

    A nextflow pipeline for polishing CLR assemblies

    isugifNF/polishCLR’s past year of commit activity
    Nextflow 16 4 5 0 Updated Feb 3, 2023
  • blast Public

    NextFlow implementation of BLAST program

    isugifNF/blast’s past year of commit activity
    Nextflow 3 MIT 4 3 0 Updated Jan 23, 2023
  • assemblyStats Public

    Run Assembly statistics on a genome assembly (BUSCO and assemblyStats and new_Assemblathon.pl)

    isugifNF/assemblyStats’s past year of commit activity
    Perl 4 5 1 0 Updated Sep 13, 2022
  • freebayes Public

    Freebayes parallelization using nextflow

    isugifNF/freebayes’s past year of commit activity
    Nextflow 0 0 0 0 Updated Aug 1, 2022
  • bwamem2 Public
    isugifNF/bwamem2’s past year of commit activity
    Nextflow 0 0 0 0 Updated May 4, 2022
  • nanoPolish Public

    Polish a nanopore assembly using Racon and Medaka

    isugifNF/nanoPolish’s past year of commit activity
    Nextflow 0 0 0 0 Updated Nov 22, 2021
  • nanoQCtrim Public

    Performs Nanoplot QC using nanoplot and adaptor trimming using downpore

    isugifNF/nanoQCtrim’s past year of commit activity
    Shell 0 0 4 0 Updated Oct 20, 2021
  • alphafold Public

    fast draft, quick testing

    isugifNF/alphafold’s past year of commit activity
    Nextflow 0 0 0 0 Updated Aug 19, 2021
  • RNAseq Public

    RNAseq from fastq reads to gene counts/quantification

    isugifNF/RNAseq’s past year of commit activity
    Nextflow 0 0 0 0 Updated Aug 13, 2021
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