diff --git a/404.html b/404.html index 4aa0c70..7dce997 100644 --- a/404.html +++ b/404.html @@ -376,7 +376,7 @@

Page not found

"link": null, "text": null }, -"download": null, +"download": ["manual.pdf"], "search": { "engine": "fuse", "options": null diff --git a/FAQ.html b/FAQ.html index 2e4a45b..97f8f65 100644 --- a/FAQ.html +++ b/FAQ.html @@ -792,7 +792,7 @@

Accessing data in OBIS14.8 Interpreting downloaded file "link": null, "text": null }, -"download": null, +"download": ["manual.pdf"], "search": { "engine": "fuse", "options": null diff --git a/checklist.html b/checklist.html index 8ab3ed8..eee36f7 100644 --- a/checklist.html +++ b/checklist.html @@ -2431,7 +2431,7 @@

8.1 Darwin Core Term Checklist fo "link": null, "text": null }, -"download": null, +"download": ["manual.pdf"], "search": { "engine": "fuse", "options": null diff --git a/citing.html b/citing.html index 27396c2..48e175c 100644 --- a/citing.html +++ b/citing.html @@ -389,7 +389,7 @@

14.9 Citing Data from OBIS10.4 Missing required fields12.6.8 Non-marine species2.2 How to handle sensitive data< "link": null, "text": null }, -"download": null, +"download": ["manual.pdf"], "search": { "engine": "fuse", "options": null diff --git a/darwin_core.html b/darwin_core.html index 6409d79..c864f57 100644 --- a/darwin_core.html +++ b/darwin_core.html @@ -747,9 +747,9 @@
2.4.1.3.4 Locationmarineregions), for example the Balearic Plain has MRGID: http://marineregions.org/mrgid/3956.

Well-Known Text (WKT) provides a representation of the geoemtry of a location and can be provided in footprintWKT. This is particularly useful for tracks, transects, tows, trawls, habitat extents, or when an exact location is not known. You can use the OBIS Maptool (Figure 2.1) to generate WKT, calculate midpoints of lines and polygons, and determine the radius of a polygon or line. Midpoints can used to populate decimalLongitude and decimalLatitude, while the radius can be used to populate coordinateUncertaintyInMeters. Additionally, an obistools R function can calculate centroids and radii. To visualize and share WKT strings, try wktmap.com.

-*A screenshot demonstrating the OBIS Maptool's WKT function. After generating a polygon, pressing the WKT button will open a pop-up where you can copy the string. The Locations table provides the longitude, latitude, and radius to be used in `decimalLongitude`, `decimalLatitude`, and `coordinateUncertaintyInMeters` respectively*. +A screenshot demonstrating the OBIS Maptool's WKT function. After generating a polygon, pressing the WKT button will open a pop-up where you can copy the string. The Locations table provides the longitude, latitude, and radius to be used in `decimalLongitude`, `decimalLatitude`, and `coordinateUncertaintyInMeters` respectively.

-Figure 2.1: A screenshot demonstrating the OBIS Maptool’s WKT function. After generating a polygon, pressing the WKT button will open a pop-up where you can copy the string. The Locations table provides the longitude, latitude, and radius to be used in decimalLongitude, decimalLatitude, and coordinateUncertaintyInMeters respectively. +Figure 2.1: A screenshot demonstrating the OBIS Maptool’s WKT function. After generating a polygon, pressing the WKT button will open a pop-up where you can copy the string. The Locations table provides the longitude, latitude, and radius to be used in decimalLongitude, decimalLatitude, and coordinateUncertaintyInMeters respectively.

Some examples of WKT strings:

@@ -957,7 +957,7 @@
2.4.1.3.7 Sampling2.4.2.2.4 Recommended reading7.1 Map data fields to Darwin Cor "link": null, "text": null }, -"download": null, +"download": ["manual.pdf"], "search": { "engine": "fuse", "options": null diff --git a/data_publication.html b/data_publication.html index c076838..69e6426 100644 --- a/data_publication.html +++ b/data_publication.html @@ -395,7 +395,7 @@

13.1 LicensesQC with R package Hmisc13.6 Publish OBIS data to GBIF2.4 Biodiversity data standardsInspecting QC flags with R15.2 obisindicators: calculating "link": null, "text": null }, -"download": null, +"download": ["manual.pdf"], "search": { "engine": "fuse", "options": null diff --git a/dna_data.html b/dna_data.html index 99b37c6..967c09b 100644 --- a/dna_data.html +++ b/dna_data.html @@ -1228,7 +1228,7 @@

8.5.4 OBIS Bioinformatics Pipelin "link": null, "text": null }, -"download": null, +"download": ["manual.pdf"], "search": { "engine": "fuse", "options": null diff --git a/eml.html b/eml.html index ab174e5..b738735 100644 --- a/eml.html +++ b/eml.html @@ -768,7 +768,7 @@

2.4.4.2.13 Additional MetadataInvertebrates abundance and distribution

In this section we will encode a fictional macroalgal survey dataset (Figure 9.1) into Darwin Core using the ENV-DATA approach, i.e. using an Event core with an Occurrence extension and an extendedMeasurementOrFact extension.

-*A fictional macroalgae survey with a single site, multiple zones, quadrats, and different types of transects.*. +A fictional macroalgae survey with a single site, multiple zones, quadrats, and different types of transects.

-Figure 11.1: A fictional macroalgae survey with a single site, multiple zones, quadrats, and different types of transects.. +Figure 11.1: A fictional macroalgae survey with a single site, multiple zones, quadrats, and different types of transects.

Event core:

@@ -912,9 +912,9 @@

Marine birds abundance and distribution

In this section we will explore how to encode a marine mammal survey dataset into Darwin Core using the ENV-DATA approach. As an example, sections of the actual dataset CETUS: Cetacean monitoring surveys in the Eastern North Atlantic are used.

-*A representation of the observation events of [CETUS: Cetacean monitoring surveys in the Eastern North Atlantic](http://ipt.vliz.be/eurobis/resource?r=cetus_cetaceans), presenting the route **Madeira** as a site with three cruises (zones). Each **Cruise** is divided into different **Transects** and each transect contains a number of **Positions***. +A representation of cetacean observation events from CETUS: Cetacean monitoring surveys in the Eastern North Atlantic, presenting the route Madeira as a site with three cruises (zones). Each Cruise is divided into different Transects and each transect contains a number of Positions.

-Figure 11.2: A representation of the observation events of CETUS: Cetacean monitoring surveys in the Eastern North Atlantic, presenting the route Madeira as a site with three cruises (zones). Each Cruise is divided into different Transects and each transect contains a number of Positions. +Figure 11.2: A representation of cetacean observation events from CETUS: Cetacean monitoring surveys in the Eastern North Atlantic, presenting the route Madeira as a site with three cruises (zones). Each Cruise is divided into different Transects and each transect contains a number of Positions.

@@ -2607,7 +2607,7 @@

Zooplankton biomass and diversity8.4.0.3 Stepwise Guidance to Form "link": null, "text": null }, -"download": null, +"download": ["manual.pdf"], "search": { "engine": "fuse", "options": null diff --git a/format_event.html b/format_event.html index e4942b2..811b1d6 100644 --- a/format_event.html +++ b/format_event.html @@ -482,7 +482,7 @@

8.3.1 Populating parent and child "link": null, "text": null }, -"download": null, +"download": ["manual.pdf"], "search": { "engine": "fuse", "options": null diff --git a/format_occurrence.html b/format_occurrence.html index f41038d..2663081 100644 --- a/format_occurrence.html +++ b/format_occurrence.html @@ -434,7 +434,7 @@

8.2.0.1 Stepwise Guidance to Form "link": null, "text": null }, -"download": null, +"download": ["manual.pdf"], "search": { "engine": "fuse", "options": null diff --git a/formatting.html b/formatting.html index 5da0a67..abae5de 100644 --- a/formatting.html +++ b/formatting.html @@ -443,7 +443,7 @@

5.4 Data formatting tools4 Data formatting workflow1.4 Getting Help in OBIS6.0.2 occurrenceID

@@ -409,7 +409,7 @@

1.2 AcknowledgementsDownloading datasets from an IPTMaintaining the IPT12.5.0.2 OBIS data format validat "link": null, "text": null }, -"download": null, +"download": ["manual.pdf"], "search": { "engine": "fuse", "options": null diff --git a/linklist.html b/linklist.html index b75a8d4..d306f84 100644 --- a/linklist.html +++ b/linklist.html @@ -475,7 +475,7 @@

Publishing Tools & Links12.4 How To Use MoF Report and To "link": null, "text": null }, -"download": null, +"download": ["manual.pdf"], "search": { "engine": "fuse", "options": null diff --git a/name_matching.html b/name_matching.html index d94312f..aa430cc 100644 --- a/name_matching.html +++ b/name_matching.html @@ -554,7 +554,7 @@

Taxon Match Tools Overview3.6 TOR of OBIS Executive Committ "link": null, "text": null }, -"download": null, +"download": ["manual.pdf"], "search": { "engine": "fuse", "options": null diff --git a/other_data_types.html b/other_data_types.html index ca312b4..869dde4 100644 --- a/other_data_types.html +++ b/other_data_types.html @@ -491,7 +491,7 @@

11.3 Tracking data16.5 Bionomia1.3.0.10 Disclaimer2.4.3.1 How to avoid redundancy9.1.4.1 How to Submit a GitHub Vo "link": null, "text": null }, -"download": null, +"download": ["manual.pdf"], "search": { "engine": "fuse", "options": null