Make it so that conf/*.sh can be trivially overridden by the user #91
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Closes #90
Prior to this commit, editing the conf/.conf files resulted in
changed configuration parameters, but editing the conf/.sh files did
not. Furthermore, there was a comment in the conf/*.sh files that
could be misconstrued.
With this commit the conf/.sh and conf/.conf files behave the same.
conf/*.sh files can be edited and then docker -v can be used to bind
mount the conf directory and the changes will take effect.
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