Code

Snakemake SLURM Functionality#77

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Merged

patricktnast merged 18 commits intoepic/snakemake-integrationihmeuw/easylink:epic/snakemake-integrationfrom feature/pnast/MIC-4905-clusterihmeuw/easylink:feature/pnast/MIC-4905-clusterCopy head branch name to clipboardMar 20, 2024

+281-72

Commits

Commits on Mar 14, 2024

• add resources

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  committed
  f9c3b1c

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Commits on Mar 15, 2024

• work on logging

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Commits on Mar 18, 2024

• Merge remote-tracking branch 'origin/epic/snakemake-integration' into feature/pnast/MIC-4905-cluster

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  3e1e7ca

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• configure tmp dir

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  636795b

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• cleanup

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  a887b4b

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• fix broken tests

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  69f1a9d

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• lint

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• format output logging

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  8bf5787

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• adjust some comments

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• add local / "slurm" arguments test

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Commits on Mar 19, 2024

• add local / slurm specific string tests

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  abdc59c

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• lint

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  98b2801

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• better check for if on slurm

  

  stevebachmeier

  authored and

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  4484216

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• use steve's check on slurm

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  0965558

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• ingnore slurm check on GHA

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Commits on Mar 20, 2024

• add executor dep

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• add step name to rules

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• parameterize tests

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