initial hack proof of principe

igvteam · Sep 30, 2023 · 235887f · 235887f
1 parent 249f942
commit 235887f
Showing 1 changed file with 101 additions and 0 deletions.
diff --git a/js/drs/terraResolver.js b/js/drs/terraResolver.js
@@ -0,0 +1,101 @@
+async function resolve(drsURL, accessToken) {
+
+    const response = await postData(drsURL, accessToken)
+    console.log(response)
+}
+
+async function postData(drsURL, accessToken) {
+    // Default options are marked with *
+    const response = await fetch("https://drshub.dsde-prod.broadinstitute.org/api/v4/drs/resolve", {
+        method: "POST",
+        headers: {
+            "Content-Type": "application/json",
+            "Authorization": `Bearer ${accessToken}`,
+        },
+        redirect: "follow", // manual, *follow, error
+        referrerPolicy: "no-referrer", // no-referrer, *no-referrer-when-downgrade, origin, origin-when-cross-origin, same-origin, strict-origin, strict-origin-when-cross-origin, unsafe-url
+        body: JSON.stringify({
+            url: drsURL,
+            fields: ["bucket", "contentType", "fileName", "gsUri", "hashes", "localizationPath", "name", "size", "timeCreated", "timeUpdated"]
+        }), // body data type must match "Content-Type" header
+    })
+    return response.text() // parses JSON response into native JavaScript objects
+}
+
+
+(async () => {
+  //  await resolve("drs://data.terra.bio/v2_3174119c-a10f-4826-a487-08f1bf831a8a", "eyJhbGciO")
+  //  await resolve("drs://data.terra.bio/v2_10a3a0c2-df0a-4950-8c3e-64c444deea36", "eyJhbGciOiJSUz")
+
+    await resolve("drs://dg.4503:dg.4503/c64fded3-459b-4fca-82bc-35d154e9aa91", "Access Token"),
+    await resolve("drs://dg.4503:dg.4503/a5d35aac-ec73-46cc-9fb0-13503717aac4", "eyJhbGciOiJS")
+
+
+})()
+
+/*
+/usr/local/bin/node /Users/jrobinso/igv-team Dropbox/James Robinson/projects/igv.js/js/drs/terraResolver.js
+{
+  "bucket" : "datarepo-8e14968c-bucket",
+  "contentType" : "binary/octet-stream",
+  "fileName" : "heart_slc25a3.bam",
+  "gsUri" : "gs://datarepo-8e14968c-bucket/75db154a-1119-4b21-8962-4b679cd1b8c0/3174119c-a10f-4826-a487-08f1bf831a8a/heart_slc25a3.bam",
+  "hashes" : {
+    "crc32c" : "9b0ad5b4",
+    "md5" : "1806446c79c6fae35df0fea9ce7674f0"
+  },
+  "localizationPath" : "/igv/heart_slc25a3.bam",
+  "name" : "75db154a-1119-4b21-8962-4b679cd1b8c0/3174119c-a10f-4826-a487-08f1bf831a8a/heart_slc25a3.bam",
+  "size" : 318324,
+  "timeCreated" : "2023-09-28T16:09:58.459Z",
+  "timeUpdated" : "2023-09-28T16:09:58.459Z"
+}
+{
+  "bucket" : "datarepo-8e14968c-bucket",
+  "contentType" : "binary/octet-stream",
+  "fileName" : "heart_slc25a3.bam.bai",
+  "gsUri" : "gs://datarepo-8e14968c-bucket/75db154a-1119-4b21-8962-4b679cd1b8c0/10a3a0c2-df0a-4950-8c3e-64c444deea36/heart_slc25a3.bam.bai",
+  "hashes" : {
+    "crc32c" : "59bbaef0",
+    "md5" : "448e60d39c6eda63fc649de87fe2bb43"
+  },
+  "localizationPath" : "/igv/heart_slc25a3.bam.bai",
+  "name" : "75db154a-1119-4b21-8962-4b679cd1b8c0/10a3a0c2-df0a-4950-8c3e-64c444deea36/heart_slc25a3.bam.bai",
+  "size" : 48688,
+  "timeCreated" : "2023-09-28T16:09:58.558Z",
+  "timeUpdated" : "2023-09-28T16:09:58.558Z"
+}
+
+Process finished with exit code 0
+
+
+{
+  "bucket" : "nih-nhlbi-biodata-catalyst-1000-genomes",
+  "contentType" : "application/json",
+  "fileName" : "HG03197.final.cram",
+  "gsUri" : "gs://nih-nhlbi-biodata-catalyst-1000-genomes/CCDG_14151/Project_CCDG_14151_B01_GRM_WGS.cram.2020-02-12/Sample_HG03197/analysis/HG03197.final.cram",
+  "hashes" : {
+    "md5" : "1b3ad8a0bab634829a11adfc965dd0df"
+  },
+  "localizationPath" : null,
+  "name" : "CCDG_14151/Project_CCDG_14151_B01_GRM_WGS.cram.2020-02-12/Sample_HG03197/analysis/HG03197.final.cram",
+  "size" : 15045663134,
+  "timeCreated" : "2020-10-02T16:08:49.348Z",
+  "timeUpdated" : "2020-10-02T16:08:49.348Z"
+}
+{
+  "bucket" : "nih-nhlbi-biodata-catalyst-1000-genomes",
+  "contentType" : "application/json",
+  "fileName" : "HG03197.final.cram.crai",
+  "gsUri" : "gs://nih-nhlbi-biodata-catalyst-1000-genomes/CCDG_14151/Project_CCDG_14151_B01_GRM_WGS.cram.2020-02-12/Sample_HG03197/analysis/HG03197.final.cram.crai",
+  "hashes" : {
+    "md5" : "7aa39824444f8c21c7c8e0c42e45aa34"
+  },
+  "localizationPath" : null,
+  "name" : "CCDG_14151/Project_CCDG_14151_B01_GRM_WGS.cram.2020-02-12/Sample_HG03197/analysis/HG03197.final.cram.crai",
+  "size" : 1311059,
+  "timeCreated" : "2020-10-02T16:08:49.455Z",
+  "timeUpdated" : "2020-10-02T16:08:49.455Z"
+}
+
+ */