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Tiledb unified ingest #9

Merged
merged 16 commits into from
Nov 18, 2024
Merged

Tiledb unified ingest #9

merged 16 commits into from
Nov 18, 2024

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bruno-ariano
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dict_type = {"chrom":np.uint8, "pos":np.uint32, "trait_id":np.dtype('S64'), "beta":np.float32, "se":np.float32, "freq":np.float32, "alt":np.dtype('S5'), "SNP":np.dtype('S20')}
# Define the TileDB array schema with SNP, gene, and population dimensions
def create_tiledb_schema(uri,cfg):
chrom_domain = (1, 22)
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This should be 24

@gmauro gmauro marked this pull request as ready for review November 18, 2024 17:38
@gmauro gmauro merged commit 2cdfbcb into main Nov 18, 2024
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@gmauro gmauro deleted the tiledb_unified_ingest branch November 18, 2024 18:13
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2 participants