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Update README.md
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mistrm82 authored May 22, 2024
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## Pre-reading:

* Please **study the contents** within the following lessons:
* [Shell basics review](https://hbctraining.github.io/Intro-to-rnaseq-hpc-salmon-flipped/lessons/shell_review.html)
* [Best Practices in Research Data Management (RDM)](https://hbctraining.github.io/Intro-to-rnaseq-hpc-salmon-flipped/lessons/04a_data_organization.html)
* [Introduction to Variant Calling](../lessons/00_intro_to_variant_calling.md)

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| Time | Topic | Instructor |
|:-----------:|:----------:|:--------:|
| 9:30 - 10:10 | [Workshop Introduction](../lectures/Variant_calling_Intro_to_workshop_all.pdf) | Will |
| 10:00 - 11:30 | [Introduction to Variant Calling]() | TBD |
| 11:30 - 11:50 | [Project Organization](../lessons/01_data_organization.md) | Will |
| 10:00 - 11:30 | [Introduction to Variant Calling]() | Dr. Elizabeth Partan |
| 11:30 - 11:50 | [Project Organization](../lessons/01_data_organization.md) | Meeta |
| 11:50 - 12:00 | Overview of self-learning materials and homework submission | Will |

### Before the next class:
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<br>The first step in many NGS studies is first to evaluate the read qualites that you received from the sequencing facility. A common tool used for handling this analysis is <code>FastQC</code>.
<br><br>This lesson will:<br>
<ul><li>Implement <code>FastQC</code> to evaluate read qualities</li>
<li>Manipulate strings of bash variable</li>
<li>Utilize sed to find-and-replace text</li></ul>
<li>Evaluate FASTQC quality metrics</li></ul>
<hr />
</details>

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